Variant report
Variant | rs10792122 |
---|---|
Chromosome Location | chr11:57770266-57770267 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | FOS | chr11:57770138-57770907 | HUVEC | blood vessel: | n/a | chr11:57770319-57770330 chr11:57770678-57770687 |
No data |
No data |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
CYCSP26 | TF binding region |
rs_ID | r2[population] |
---|---|
rs10750876 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs10792119 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs10792120 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs10792121 | 0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs10792126 | 0.83[AMR][1000 genomes];0.84[ASN][1000 genomes] |
rs10792128 | 0.83[AMR][1000 genomes];0.84[ASN][1000 genomes] |
rs10792129 | 0.80[AMR][1000 genomes];0.84[ASN][1000 genomes] |
rs10896663 | 0.94[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs10896668 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs10896671 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs10896672 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs10896674 | 0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs10896675 | 0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs10896690 | 0.83[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rs10896692 | 0.83[AMR][1000 genomes];0.84[ASN][1000 genomes] |
rs10896693 | 0.80[ASN][1000 genomes] |
rs10896696 | 0.89[AFR][1000 genomes] |
rs11229194 | 0.86[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs11229195 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs11229221 | 0.80[AMR][1000 genomes];0.86[ASN][1000 genomes] |
rs1123307 | 0.89[AFR][1000 genomes] |
rs11512733 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs12281690 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs1317828 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs1510419 | 0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1510421 | 0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1848880 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs1848882 | 0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1848883 | 0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2003375 | 0.89[AFR][1000 genomes] |
rs2089748 | 0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs2136726 | 0.84[EUR][1000 genomes] |
rs2839749 | 0.80[ASN][1000 genomes] |
rs2866828 | 0.84[EUR][1000 genomes] |
rs2866829 | 0.84[EUR][1000 genomes] |
rs34243081 | 0.82[AMR][1000 genomes] |
rs3851119 | 0.81[AMR][1000 genomes] |
rs4272801 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs4938883 | 0.81[AMR][1000 genomes] |
rs4939170 | 0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs59594813 | 0.80[ASN][1000 genomes] |
rs6591447 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs7113065 | 0.80[ASN][1000 genomes] |
rs7126858 | 0.80[ASN][1000 genomes] |
rs7924376 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7924454 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs938012 | 0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs9795237 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1044030 | chr11:57073395-58035564 | Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 136 gene(s) | inside rSNPs | diseases |
2 | nsv541047 | chr11:57073395-58035564 | Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 136 gene(s) | inside rSNPs | diseases |
3 | nsv1054205 | chr11:57544264-58358509 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 67 gene(s) | inside rSNPs | diseases |
4 | nsv897589 | chr11:57623815-58052357 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
5 | nsv328 | chr11:57744748-57789940 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandlncRNA | 2 gene(s) | inside rSNPs | diseases |
6 | nsv975361 | chr11:57761225-57786621 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandlncRNA | 2 gene(s) | inside rSNPs | diseases |
7 | esv2761678 | chr11:57768288-57810886 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandlncRNA | 5 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:57768600-57770600 | Enhancers | HUVEC | blood vessel |
2 | chr11:57769000-57771800 | Weak transcription | HepG2 | liver |
3 | chr11:57769400-57771000 | Enhancers | Left Ventricle | heart |
4 | chr11:57769800-57771000 | Enhancers | Adipose Nuclei | Adipose |
5 | chr11:57770200-57770400 | Enhancers | Right Atrium | heart |
6 | chr11:57770200-57771000 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |