Variant report

Variant	rs10750876
Chromosome Location	chr11:57768554-57768555
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10750878	0.88[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap]
rs10750880	0.94[CEU][hapmap];0.81[CHB][hapmap]
rs10750882	0.82[CEU][hapmap]
rs10792119	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10792120	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10792121	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10792122	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10792126	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10792128	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10792129	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10792130	0.89[GIH][hapmap]
rs10792135	0.82[CEU][hapmap]
rs10896663	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10896668	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10896671	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10896672	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10896674	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10896675	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10896690	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10896692	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10896693	0.81[ASN][1000 genomes]
rs10896696	0.87[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap]
rs11229194	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11229195	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11229221	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11229247	0.82[CEU][hapmap]
rs11229250	0.82[CEU][hapmap]
rs1123307	0.88[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap]
rs11512733	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12281690	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12363350	0.82[CEU][hapmap];0.81[CHD][hapmap]
rs1317828	0.84[EUR][1000 genomes]
rs1447169	0.82[CEU][hapmap]
rs1510419	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1510421	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1848880	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1848882	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1848883	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1868043	0.88[CEU][hapmap];0.90[CHB][hapmap];0.81[CHD][hapmap];0.88[GIH][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap]
rs2003375	0.88[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap]
rs2089748	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2136726	0.84[EUR][1000 genomes]
rs2167358	0.88[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap]
rs2441958	0.82[AMR][1000 genomes]
rs2441979	0.86[GIH][hapmap]
rs2513726	0.89[GIH][hapmap]
rs2513727	0.89[GIH][hapmap]
rs2514187	0.87[GIH][hapmap]
rs2839749	0.81[ASN][1000 genomes]
rs2866828	0.84[EUR][1000 genomes]
rs2866829	0.84[EUR][1000 genomes]
rs34243081	0.86[AMR][1000 genomes]
rs3851119	0.82[AMR][1000 genomes]
rs3974323	0.82[CEU][hapmap];0.81[CHD][hapmap]
rs4272801	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4938883	0.82[AMR][1000 genomes]
rs4939170	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4939176	0.88[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap]
rs4939182	0.82[CEU][hapmap]
rs59594813	0.81[ASN][1000 genomes]
rs6591447	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6591455	0.82[CEU][hapmap];0.81[CHB][hapmap];0.81[CHD][hapmap]
rs7109726	0.82[CEU][hapmap]
rs7110748	0.82[CEU][hapmap]
rs7113065	0.81[ASN][1000 genomes]
rs7117711	0.81[CEU][hapmap]
rs7118536	0.88[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap]
rs7125209	0.81[AMR][1000 genomes]
rs7126858	0.81[ASN][1000 genomes]
rs7924376	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7924454	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7952724	0.80[ASN][1000 genomes]
rs921133	0.82[CEU][hapmap];0.89[GIH][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs921134	0.89[GIH][hapmap]
rs921135	0.89[GIH][hapmap]
rs938012	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs976429	0.88[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap]
rs9795237	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv328	chr11:57744748-57789940	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv975361	chr11:57761225-57786621	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2761678	chr11:57768288-57810886	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10750876	YPEL4	cis	multi-tissue	Pritchard
rs10750876	MS4A8B	cis	cerebellum	SCAN
rs10750876	OR4C6	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57767800-57769000	Enhancers	HepG2	liver

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