Variant report

Variant	rs1374570
Chromosome Location	chr11:57799371-57799372
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1013447	0.83[JPT][hapmap]
rs10792130	0.82[JPT][hapmap]
rs10792139	0.81[CEU][hapmap]
rs11229236	0.83[JPT][hapmap]
rs11229237	0.83[JPT][hapmap]
rs1123196	0.86[JPT][hapmap]
rs12418866	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12786623	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1451326	0.81[CEU][hapmap]
rs2100110	0.83[JPT][hapmap]
rs2218598	0.83[JPT][hapmap]
rs2441952	0.90[JPT][hapmap]
rs2441979	0.82[JPT][hapmap]
rs2443447	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs2513726	0.82[JPT][hapmap]
rs2513727	0.82[JPT][hapmap]
rs2513730	0.83[JPT][hapmap]
rs2514181	0.83[JPT][hapmap]
rs2514187	0.82[JPT][hapmap]
rs2514202	0.82[JPT][hapmap]
rs2866830	0.83[JPT][hapmap]
rs6591450	0.85[ASN][1000 genomes]
rs7103284	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs921134	0.82[JPT][hapmap]
rs921135	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	esv2761678	chr11:57768288-57810886	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57792000-57811400	Weak transcription	Right Atrium	heart
2	chr11:57798400-57799400	ZNF genes & repeats	Lung	lung
3	chr11:57799200-57808200	Weak transcription	Pancreas	Pancrea

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