Variant report

Variant	rs7103284
Chromosome Location	chr11:57786238-57786239
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1013447	0.82[JPT][hapmap]
rs10792130	0.82[JPT][hapmap]
rs10792139	0.84[CEU][hapmap]
rs10896687	0.89[ASN][1000 genomes]
rs10896705	0.80[CEU][hapmap];0.80[TSI][hapmap]
rs11229236	0.82[JPT][hapmap]
rs11229237	0.82[JPT][hapmap]
rs1123196	0.85[JPT][hapmap]
rs12418866	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12786623	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12799639	0.83[ASN][1000 genomes]
rs1374570	0.96[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1447165	0.83[CEU][hapmap]
rs1447168	0.80[CEU][hapmap];0.82[TSI][hapmap]
rs1451326	0.84[CEU][hapmap];0.85[TSI][hapmap]
rs1900536	0.80[CEU][hapmap];0.82[TSI][hapmap]
rs2044856	0.80[CEU][hapmap]
rs2100110	0.82[JPT][hapmap]
rs2218598	0.82[JPT][hapmap]
rs2441952	0.94[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs2441979	0.82[JPT][hapmap]
rs2443447	0.96[CEU][hapmap];0.82[JPT][hapmap];0.95[TSI][hapmap]
rs2513726	0.82[JPT][hapmap]
rs2513727	0.82[JPT][hapmap]
rs2513730	0.82[JPT][hapmap]
rs2514181	0.82[JPT][hapmap]
rs2514187	0.82[JPT][hapmap]
rs2514202	0.81[JPT][hapmap]
rs2866830	0.82[JPT][hapmap]
rs3851121	0.88[ASN][1000 genomes]
rs6591450	0.82[ASN][1000 genomes]
rs716945	0.84[CEU][hapmap]
rs921134	0.82[JPT][hapmap]
rs921135	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv328	chr11:57744748-57789940	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv975361	chr11:57761225-57786621	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2761678	chr11:57768288-57810886	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7103284	OR4C6	cis	parietal	SCAN
rs7103284	MS4A6A	cis	cerebellum	SCAN
rs7103284	OR5AS1	cis	parietal	SCAN
rs7103284	OR8J3	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57785800-57791400	Weak transcription	Pancreas	Pancrea
2	chr11:57786000-57787200	Weak transcription	Left Ventricle	heart

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