Variant report

Variant	rs3856635
Chromosome Location	chr3:138022212-138022213
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:138020116..138022274-chr3:138047618..138049847,2	MCF-7	breast:
2	chr3:138014379..138015953-chr3:138021613..138023871,2	K562	blood:
3	chr3:138016564..138021250-chr3:138021841..138026048,7	K562	blood:
4	chr3:138020888..138022867-chr3:138025630..138028543,3	K562	blood:

Variant related genes	Relation type
ENSG00000181322	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11716014	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530056	chr3:137312356-138161861	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv877537	chr3:137979007-138215114	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv530057	chr3:138014877-138734390	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:137982000-138026600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:138005400-138027000	Weak transcription	Fetal Heart	heart
3	chr3:138007400-138024600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:138017800-138025200	Weak transcription	Aorta	Aorta
5	chr3:138017800-138025600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:138018200-138026200	Weak transcription	HSMMtube	muscle
7	chr3:138018200-138026400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:138018200-138026400	Weak transcription	Primary T cells from cord blood	blood
9	chr3:138018200-138042600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:138018400-138023800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr3:138018600-138022400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr3:138018600-138023200	Weak transcription	Left Ventricle	heart
13	chr3:138018600-138023800	Weak transcription	Esophagus	oesophagus
14	chr3:138018600-138025600	Weak transcription	Thymus	Thymus
15	chr3:138018800-138023000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr3:138018800-138023600	Weak transcription	Lung	lung
17	chr3:138018800-138023800	Weak transcription	Pancreas	Pancrea
18	chr3:138019000-138022800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr3:138019000-138023800	Weak transcription	HSMM	muscle
20	chr3:138019000-138025200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr3:138019000-138025600	Weak transcription	Fetal Stomach	stomach
22	chr3:138019000-138025800	Weak transcription	Brain Germinal Matrix	brain
23	chr3:138019000-138026800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr3:138019200-138022600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr3:138019200-138023000	Weak transcription	NHEK	skin
26	chr3:138019200-138025400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr3:138019600-138025400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr3:138020800-138023800	Weak transcription	Fetal Brain Male	brain
29	chr3:138020800-138024000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr3:138021200-138023000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr3:138022000-138022600	Active TSS	Brain Angular Gyrus	brain
32	chr3:138022000-138022600	Active TSS	Brain Anterior Caudate	brain
33	chr3:138022000-138022600	Active TSS	Brain Inferior Temporal Lobe	brain
34	chr3:138022000-138022800	Active TSS	Brain Substantia Nigra	brain
35	chr3:138022000-138024200	Strong transcription	Skeletal Muscle Female	skeletal muscle
36	chr3:138022200-138022600	Active TSS	Brain Cingulate Gyrus	brain
37	chr3:138022200-138022600	Active TSS	Brain Hippocampus Middle	brain

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