Variant report

Variant	rs11716014
Chromosome Location	chr3:138014949-138014950
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:138014379..138015953-chr3:138021613..138023871,2	K562	blood:
2	chr3:138013359..138015664-chr3:138015823..138019063,3	MCF-7	breast:
3	chr3:138010420..138011978-chr3:138013605..138016116,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs3856635	1.00[LWK][hapmap]
rs6772467	1.00[CHD][hapmap];1.00[LWK][hapmap]
rs6788103	1.00[CHD][hapmap]
rs7631817	1.00[CHD][hapmap]
rs9681837	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530056	chr3:137312356-138161861	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv877537	chr3:137979007-138215114	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv530057	chr3:138014877-138734390	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:137944800-138017400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:137956400-138019400	Weak transcription	Small Intestine	intestine
3	chr3:137977200-138019000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:137982000-138026600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:137986000-138017000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:137992800-138018200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr3:137999600-138018600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr3:137999600-138018600	Strong transcription	Adipose Nuclei	Adipose
9	chr3:137999600-138018800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr3:137999800-138018200	Strong transcription	Primary T cells from cord blood	blood
11	chr3:138000400-138017200	Strong transcription	HSMM	muscle
12	chr3:138000400-138018000	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr3:138000400-138018800	Strong transcription	Fetal Muscle Leg	muscle
14	chr3:138000400-138019000	Strong transcription	Stomach Smooth Muscle	stomach
15	chr3:138000600-138018200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr3:138000800-138018800	Strong transcription	Lung	lung
17	chr3:138001000-138016600	Strong transcription	Rectal Mucosa Donor 31	rectum
18	chr3:138001000-138018200	Strong transcription	Sigmoid Colon	Sigmoid Colon
19	chr3:138001600-138018000	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr3:138001800-138016200	Strong transcription	Primary B cells from peripheral blood	blood
21	chr3:138001800-138017800	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr3:138001800-138017800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr3:138001800-138017800	Strong transcription	Liver	Liver
24	chr3:138001800-138018600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr3:138001800-138018600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr3:138001800-138018600	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr3:138002000-138018600	Strong transcription	Thymus	Thymus
28	chr3:138002000-138018800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr3:138002200-138018000	Strong transcription	Duodenum Smooth Muscle	Duodenum
30	chr3:138002200-138018400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr3:138002200-138018600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr3:138002200-138018600	Strong transcription	Left Ventricle	heart
33	chr3:138002200-138018800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr3:138002400-138015200	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr3:138002400-138016600	Strong transcription	Dnd41	blood
36	chr3:138002400-138018000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr3:138002400-138018000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr3:138002400-138018200	Strong transcription	Fetal Thymus	thymus
39	chr3:138002400-138018800	Strong transcription	Fetal Muscle Trunk	muscle
40	chr3:138002600-138016000	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr3:138002600-138016800	Strong transcription	Ovary	ovary
42	chr3:138002600-138017800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr3:138002600-138018600	Strong transcription	Duodenum Mucosa	Duodenum
44	chr3:138002600-138019200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr3:138002800-138016200	Strong transcription	Primary B cells from cord blood	blood
46	chr3:138002800-138018000	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr3:138002800-138019000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr3:138003000-138015600	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr3:138003000-138017800	Strong transcription	HUES48 Cell Line	embryonic stem cell
50	chr3:138003000-138018800	Strong transcription	Cortex derived primary cultured neurospheres	brain

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