Variant report

Variant	rs7631817
Chromosome Location	chr3:137940935-137940936
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:137935316..137936932-chr3:137940112..137941643,2	MCF-7	breast:
2	chr3:137904685..137906516-chr3:137939797..137942288,3	K562	blood:

Variant related genes	Relation type
ENSG00000114098	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11716014	1.00[CHD][hapmap]
rs13321638	1.00[TSI][hapmap]
rs16847931	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs3886726	0.91[YRI][hapmap]
rs3963416	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6783016	0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs6788103	1.00[CHD][hapmap]
rs6789862	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6796663	0.86[YRI][hapmap]
rs6797207	0.86[YRI][hapmap]
rs7637825	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs9681837	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530056	chr3:137312356-138161861	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv877536	chr3:137870523-137970907	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:137907600-137941600	Weak transcription	Lung	lung
2	chr3:137907600-137942200	Weak transcription	Pancreas	Pancrea
3	chr3:137907600-137942400	Weak transcription	Spleen	Spleen
4	chr3:137907800-137941000	Weak transcription	Fetal Kidney	kidney
5	chr3:137908400-137941600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr3:137908400-137942200	Weak transcription	NHDF-Ad	bronchial
7	chr3:137908400-137942400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr3:137908400-137956200	Weak transcription	A549	lung
9	chr3:137908800-137941800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr3:137908800-137942200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr3:137910600-137941600	Weak transcription	Hela-S3	cervix
12	chr3:137911000-137941000	Weak transcription	Placenta	Placenta
13	chr3:137911000-137942400	Weak transcription	Brain Germinal Matrix	brain
14	chr3:137911800-137941600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr3:137912000-137941600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:137912400-137942400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:137915000-137942000	Weak transcription	Fetal Brain Male	brain
18	chr3:137915400-137941800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr3:137916000-137941400	Weak transcription	Fetal Intestine Large	intestine
20	chr3:137918600-137941800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr3:137919200-137964800	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr3:137922600-137941800	Weak transcription	Esophagus	oesophagus
23	chr3:137922600-137942200	Weak transcription	Stomach Mucosa	stomach
24	chr3:137922800-137941600	Weak transcription	Adipose Nuclei	Adipose
25	chr3:137922800-137941800	Weak transcription	Ovary	ovary
26	chr3:137922800-137942200	Weak transcription	HSMMtube	muscle
27	chr3:137923000-137941600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr3:137923000-137941600	Weak transcription	Thymus	Thymus
29	chr3:137923200-137941600	Weak transcription	Aorta	Aorta
30	chr3:137923200-137942200	Weak transcription	Right Ventricle	heart
31	chr3:137924400-137943200	Weak transcription	NH-A	brain
32	chr3:137924600-137941600	Weak transcription	Gastric	stomach
33	chr3:137925600-137942200	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr3:137925800-137942200	Weak transcription	Fetal Lung	lung
35	chr3:137926000-137941200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr3:137926000-137942200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr3:137926000-137942200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr3:137926000-137942200	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr3:137926000-137951200	Weak transcription	Fetal Heart	heart
40	chr3:137926200-137941600	Weak transcription	Brain Angular Gyrus	brain
41	chr3:137926200-137941600	Weak transcription	Fetal Muscle Leg	muscle
42	chr3:137926200-137942200	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr3:137927200-137942400	Weak transcription	Fetal Intestine Small	intestine
44	chr3:137928800-137942200	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr3:137929000-137941000	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr3:137929600-137942200	Weak transcription	Fetal Brain Female	brain
47	chr3:137929600-137942400	Weak transcription	NHLF	lung
48	chr3:137929800-137941400	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr3:137929800-137941600	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr3:137929800-137941800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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