Variant report

Variant	rs9681837
Chromosome Location	chr3:137990640-137990641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11716014	1.00[CHD][hapmap]
rs6772467	1.00[CHD][hapmap]
rs6788103	1.00[CHD][hapmap]
rs7631817	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530056	chr3:137312356-138161861	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv877537	chr3:137979007-138215114	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:137942800-137993400	Weak transcription	Fetal Brain Male	brain
2	chr3:137943600-137992000	Weak transcription	Gastric	stomach
3	chr3:137944200-137992000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:137944800-138017400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:137946200-137991800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:137950800-137992000	Weak transcription	NHLF	lung
7	chr3:137951200-137992000	Weak transcription	Pancreas	Pancrea
8	chr3:137952200-137992000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr3:137953600-137992000	Weak transcription	Colonic Mucosa	Colon
10	chr3:137954600-138014400	Weak transcription	NHDF-Ad	bronchial
11	chr3:137956400-138019400	Weak transcription	Small Intestine	intestine
12	chr3:137957600-137991800	Weak transcription	Brain Substantia Nigra	brain
13	chr3:137958000-137993200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr3:137962000-137992000	Weak transcription	Fetal Kidney	kidney
15	chr3:137964200-137992000	Weak transcription	Hela-S3	cervix
16	chr3:137964800-137992000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr3:137964800-137992000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr3:137964800-137992000	Weak transcription	Esophagus	oesophagus
19	chr3:137964800-138003800	Weak transcription	K562	blood
20	chr3:137965400-137992000	Weak transcription	Brain Germinal Matrix	brain
21	chr3:137965400-137992200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr3:137967000-137991800	Weak transcription	HepG2	liver
23	chr3:137968000-137992000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr3:137971800-138001600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr3:137974800-137995600	Strong transcription	Primary T cells from cord blood	blood
26	chr3:137975200-137990800	Weak transcription	Osteobl	bone
27	chr3:137976000-137997000	Strong transcription	Primary B cells from cord blood	blood
28	chr3:137977200-138019000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr3:137977600-137997000	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr3:137978200-138000800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr3:137979400-137991800	Weak transcription	Stomach Mucosa	stomach
32	chr3:137980600-137997000	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr3:137980800-137991200	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr3:137980800-137997000	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr3:137980800-137997000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr3:137981200-137997000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr3:137981800-137994800	Weak transcription	Fetal Heart	heart
38	chr3:137981800-137995400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr3:137981800-138011600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr3:137982000-138026600	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr3:137982200-137995200	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr3:137982200-137997200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr3:137982600-137995200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr3:137982600-137995400	Strong transcription	Fetal Intestine Large	intestine
45	chr3:137982600-137997000	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr3:137982600-137997000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr3:137982800-137995400	Strong transcription	Fetal Thymus	thymus
48	chr3:137982800-137997000	Strong transcription	Adipose Nuclei	Adipose
49	chr3:137983200-137991800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr3:137983200-137991800	Weak transcription	Colon Smooth Muscle	Colon

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