Variant report

Variant	rs6796663
Chromosome Location	chr3:138001553-138001554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:137906619..137908524-chr3:138000915..138003468,2	MCF-7	breast:
2	chr3:138000640..138002388-chr3:138005700..138007574,2	MCF-7	breast:
3	chr3:137892340..137895026-chr3:137999556..138002419,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138231	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16847931	0.86[YRI][hapmap]
rs3886726	1.00[ASW][hapmap];0.90[LWK][hapmap];0.87[MKK][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6783016	0.91[YRI][hapmap]
rs6789862	0.86[YRI][hapmap]
rs6797207	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7631817	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530056	chr3:137312356-138161861	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv877537	chr3:137979007-138215114	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:137944800-138017400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:137954600-138014400	Weak transcription	NHDF-Ad	bronchial
3	chr3:137956400-138019400	Weak transcription	Small Intestine	intestine
4	chr3:137964800-138003800	Weak transcription	K562	blood
5	chr3:137971800-138001600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:137977200-138019000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:137981800-138011600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:137982000-138026600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr3:137985200-138008200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr3:137986000-138017000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr3:137991000-138003000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr3:137992200-138003800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr3:137992400-138008400	Weak transcription	Stomach Mucosa	stomach
14	chr3:137992600-138002400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:137992600-138002800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr3:137992600-138002800	Weak transcription	Colonic Mucosa	Colon
17	chr3:137992600-138003200	Weak transcription	NHLF	lung
18	chr3:137992600-138003600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr3:137992600-138003600	Weak transcription	Psoas Muscle	Psoas
20	chr3:137992600-138004200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr3:137992600-138004400	Weak transcription	Pancreas	Pancrea
22	chr3:137992600-138005800	Weak transcription	A549	lung
23	chr3:137992600-138009000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr3:137992800-138002600	Weak transcription	Right Ventricle	heart
25	chr3:137992800-138003400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr3:137992800-138018200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr3:137993000-138002400	Weak transcription	Gastric	stomach
28	chr3:137993000-138002600	Weak transcription	Aorta	Aorta
29	chr3:137993000-138003600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr3:137993000-138003800	Weak transcription	Brain Angular Gyrus	brain
31	chr3:137993200-138005400	Weak transcription	Esophagus	oesophagus
32	chr3:137993600-138003200	Weak transcription	Brain Germinal Matrix	brain
33	chr3:137993800-138002600	Weak transcription	HepG2	liver
34	chr3:137993800-138003000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr3:137993800-138003200	Weak transcription	Fetal Kidney	kidney
36	chr3:137993800-138003200	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr3:137993800-138003200	Weak transcription	Spleen	Spleen
38	chr3:137993800-138003400	Weak transcription	Osteobl	bone
39	chr3:137993800-138003600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr3:137993800-138005000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr3:137994000-138001600	Weak transcription	GM12878-XiMat	blood
42	chr3:137994000-138002000	Weak transcription	Thymus	Thymus
43	chr3:137994000-138002400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr3:137994000-138002600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr3:137994000-138002600	Weak transcription	Ovary	ovary
46	chr3:137994000-138003200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr3:137994000-138003600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr3:137994000-138003600	Weak transcription	Brain Substantia Nigra	brain
49	chr3:137994000-138003600	Weak transcription	HSMMtube	muscle
50	chr3:137994000-138005000	Weak transcription	Fetal Brain Male	brain

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