Variant report
| Variant | rs3857539 |
|---|---|
| Chromosome Location | chr6:24099370-24099371 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:24094834..24097274-chr6:24098299..24100012,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10046275 | 0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10046359 | 0.87[ASN][1000 genomes] |
| rs10214892 | 0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs10806982 | 0.89[ASN][1000 genomes] |
| rs10946665 | 0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12210651 | 0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1277135 | 0.89[ASN][1000 genomes] |
| rs1277136 | 0.89[ASN][1000 genomes] |
| rs1277137 | 0.89[ASN][1000 genomes] |
| rs1277139 | 0.88[ASN][1000 genomes] |
| rs1290088 | 0.89[ASN][1000 genomes] |
| rs1879476 | 0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1915464 | 0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2683639 | 0.89[ASN][1000 genomes] |
| rs34720534 | 0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6914382 | 0.89[ASN][1000 genomes] |
| rs6922435 | 0.89[ASN][1000 genomes] |
| rs6930187 | 0.89[ASN][1000 genomes] |
| rs7762311 | 0.89[ASN][1000 genomes] |
| rs9460965 | 0.89[ASN][1000 genomes] |
| rs9467034 | 0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9467036 | 0.80[ASN][1000 genomes] |
| rs9689955 | 0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1029930 | chr6:23481989-24289948 | Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:24097800-24103800 | Weak transcription | Brain Germinal Matrix | brain |
