Variant report

Variant	rs12210651
Chromosome Location	chr6:24077431-24077432
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10046275	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10046359	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10214892	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10806982	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10946665	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1277135	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1277136	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1277137	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1277138	0.82[ASN][1000 genomes]
rs1277139	0.99[ASN][1000 genomes]
rs1290088	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1879476	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1915464	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2683639	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34720534	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3857539	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6914382	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6922435	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6930187	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7762311	0.99[ASN][1000 genomes]
rs9460965	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9467034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467036	0.88[ASN][1000 genomes]
rs9689955	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv883479	chr6:23804221-24090497	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv462660	chr6:24052526-24080370	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv601145	chr6:24052526-24080370	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12210651	ZNF204P	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24070200-24078200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:24072800-24079800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:24076600-24077600	Weak transcription	Fetal Brain Male	brain
4	chr6:24076600-24083800	Weak transcription	Pancreas	Pancrea
5	chr6:24077000-24078000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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