Variant report
| Variant | rs1277138 |
|---|---|
| Chromosome Location | chr6:24075682-24075683 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10046275 | 0.82[ASN][1000 genomes] |
| rs10046359 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10806982 | 0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10946665 | 0.82[ASN][1000 genomes] |
| rs12210651 | 0.82[ASN][1000 genomes] |
| rs1277135 | 0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1277136 | 0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1277137 | 0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1277139 | 0.86[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1290088 | 0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1915464 | 0.81[ASN][1000 genomes] |
| rs2683639 | 0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs34720534 | 0.82[ASN][1000 genomes] |
| rs6914382 | 0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6922435 | 0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6930187 | 0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7762311 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9460965 | 0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9467034 | 0.82[ASN][1000 genomes] |
| rs9467036 | 0.84[ASN][1000 genomes] |
| rs9689955 | 0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1029930 | chr6:23481989-24289948 | Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv883479 | chr6:23804221-24090497 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv462660 | chr6:24052526-24080370 | Enhancers Flanking Active TSS Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv601145 | chr6:24052526-24080370 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:24070200-24078200 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 2 | chr6:24072800-24079800 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
