Variant report

Variant	rs3857546
Chromosome Location	chr6:26157762-26157763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:537)
CpG islands
(count:0)
Chromatin interactive
region (count:170)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:537 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MEF2A	chr6:26156360-26159557	K562	blood:	n/a	chr6:26158140-26158151 chr6:26158136-26158157 chr6:26158261-26158276 chr6:26158261-26158278 chr6:26158136-26158157 chr6:26158136-26158157 chr6:26158141-26158150 chr6:26158137-26158153 chr6:26156409-26156423 chr6:26158138-26158153 chr6:26158263-26158278 chr6:26158933-26158941
2	TCF12	chr6:26156318-26158800	GM12878	blood:	n/a	n/a
3	GATA3	chr6:26156280-26159538	A549	lung:	n/a	chr6:26158931-26158941
4	POLR2A	chr6:26156287-26160737	GM12878	blood:	n/a	n/a
5	ZKSCAN1	chr6:26156330-26158760	Hela-S3	cervix:	n/a	n/a
6	CEBPB	chr6:26157156-26158529	ECC-1	luminal epithelium:	n/a	chr6:26158208-26158216
7	NFIC	chr6:26157158-26158601	SK-N-SH	brain:	n/a	n/a
8	MBD4	chr6:26156346-26159433	HepG2	liver:	n/a	n/a
9	POLR2A	chr6:26156355-26159394	GM18505	blood:	n/a	n/a
10	TAF1	chr6:26157056-26158690	PFSK-1	brain:	n/a	n/a
11	RELA	chr6:26156412-26159218	GM10847	blood:	n/a	n/a
12	MAZ	chr6:26156376-26158656	K562	blood:	n/a	n/a
13	ETS1	chr6:26156444-26159148	GM12878	blood:	n/a	chr6:26156576-26156589 chr6:26156579-26156588
14	POLR2A	chr6:26156191-26159464	U87	brain:	n/a	n/a
15	USF1	chr6:26157313-26158708	A549	lung:	n/a	n/a
16	MAX	chr6:26156274-26158645	A549	lung:	n/a	n/a
17	EP300	chr6:26157752-26158563	GM12878	blood:	n/a	n/a
18	EGR1	chr6:26157162-26158155	GM12878	blood:	n/a	chr6:26157942-26157952
19	CHD2	chr6:26156262-26159190	GM12878	blood:	n/a	n/a
20	POLR2A	chr6:26156363-26159310	GM15510	blood:	n/a	n/a
21	RCOR1	chr6:26156378-26158691	GM12878	blood:	n/a	n/a
22	HCFC1	chr6:26157211-26158615	K562	blood:	n/a	n/a
23	EP300	chr6:26156348-26158806	A549	lung:	n/a	n/a
24	POLR2A	chr6:26156392-26162162	K562	blood:	n/a	n/a
25	PBX3	chr6:26157113-26158592	A549	lung:	n/a	chr6:26158208-26158217
26	POLR2A	chr6:26156252-26159454	GM12891	blood:	n/a	n/a
27	CTCF	chr6:26157418-26157808	A549	lung:	n/a	n/a
28	PAX5	chr6:26157320-26157928	GM12892	blood:	n/a	n/a
29	POLR2A	chr6:26156218-26160153	ECC-1	luminal epithelium:	n/a	n/a
30	USF2	chr6:26156474-26159273	H1-hESC	embryonic stem cell:	n/a	n/a
31	ZBTB33	chr6:26156266-26159508	SK-N-SH	brain:	n/a	n/a
32	ZBTB33	chr6:26156259-26158782	HCT-116	colon:	n/a	n/a
33	PAX5	chr6:26156376-26158859	GM12878	blood:	n/a	n/a
34	SIN3AK20	chr6:26156280-26159915	SK-N-SH	brain:	n/a	n/a
35	CEBPD	chr6:26157598-26158155	HepG2	liver:	n/a	n/a
36	RUNX3	chr6:26156276-26159357	GM12878	blood:	n/a	n/a
37	NFATC1	chr6:26156295-26159251	GM12878	blood:	n/a	n/a
38	TCF12	chr6:26157342-26158654	A549	lung:	n/a	n/a
39	GTF2F1	chr6:26157159-26158696	K562	blood:	n/a	n/a
40	STAT3	chr6:26157704-26158608	MCF10A-Er-Src	breast:	n/a	n/a
41	MAX	chr6:26156243-26159413	HCT-116	colon:	n/a	n/a
42	EP300	chr6:26157633-26158519	K562	blood:	n/a	n/a
43	ARID3A	chr6:26157592-26158574	K562	blood:	n/a	n/a
44	SIN3A	chr6:26156366-26160075	H1-hESC	embryonic stem cell:	n/a	chr6:26156537-26156550
45	CEBPB	chr6:26157042-26158594	K562	blood:	n/a	chr6:26158208-26158216
46	POLR2A	chr6:26156305-26159909	K562	blood:	n/a	n/a
47	ATF3	chr6:26157739-26158551	A549	lung:	n/a	n/a
48	EP300	chr6:26157110-26158859	GM12878	blood:	n/a	n/a
49	BHLHE40	chr6:26157397-26158585	K562	blood:	n/a	n/a
50	FOSL2	chr6:26157157-26158878	HepG2	liver:	n/a	chr6:26157943-26157952 chr6:26157942-26157951

No data

(count:170 , 50 per page) page: 1 2 3 4

No.	Distal block	Cell Line	Cell type
1	chr11:95522658..95523310-chr6:26157100..26157967,2	Hela-S3	cervix:
2	chr6:26156738..26158730-chr6:26923909..26926382,2	K562	blood:
3	chr11:118965656..118966496-chr6:26157375..26158375,2	Hela-S3	cervix:
4	chr19:1438486..1441264-chr6:26157588..26160281,2	K562	blood:
5	chr19:50168581..50169145-chr6:26157495..26158390,2	Hela-S3	cervix:
6	chr19:11639857..11640567-chr6:26157485..26158388,2	Hela-S3	cervix:
7	chr17:41445141..41446014-chr6:26157163..26158161,3	Hela-S3	cervix:
8	chr6:26156585..26158264-chr6:32937742..32940470,2	MCF-7	breast:
9	chr11:72853178..72853964-chr6:26157634..26158477,2	Hela-S3	cervix:
10	chr4:1283187..1284079-chr6:26157656..26158585,2	NB4	blood:
11	chr5:40834851..40835718-chr6:26157306..26157880,2	HCT-116	colon:
12	chr12:14927351..14929562-chr6:26155304..26157827,2	MCF-7	breast:
13	chr20:34823793..34824638-chr6:26157570..26158378,2	NB4	blood:
14	chr19:11200282..11200904-chr6:26157380..26157967,2	Hela-S3	cervix:
15	chr1:197871462..197872023-chr6:26157525..26158192,2	Hela-S3	cervix:
16	chr10:104474244..104475090-chr6:26157400..26157923,2	Hela-S3	cervix:
17	chr19:10514158..10514796-chr6:26157442..26158194,2	Hela-S3	cervix:
18	chr1:206858815..206859706-chr6:26157090..26157807,2	Hela-S3	cervix:
19	chr4:174291399..174291965-chr6:26156941..26157876,2	Hela-S3	cervix:
20	chr20:35234195..35234695-chr6:26157325..26158193,2	Hela-S3	cervix:
21	chr3:56716520..56717389-chr6:26157669..26158536,2	Hela-S3	cervix:
22	chr6:26021580..26022163-chr6:26157717..26158787,3	Hela-S3	cervix:
23	chr19:56631827..56632657-chr6:26157107..26158345,4	Hela-S3	cervix:
24	chr6:26154851..26161490-chr6:27803982..27809302,10	MCF-7	breast:
25	chr6:26157128..26159753-chr6:26519202..26521718,3	K562	blood:
26	chr6:26156544..26158635-chr9:115248573..115251037,2	MCF-7	breast:
27	chr2:65659009..65659625-chr6:26157409..26158089,2	Hela-S3	cervix:
28	chr14:50359173..50359994-chr6:26157665..26158297,2	Hela-S3	cervix:
29	chr6:26155821..26161666-chr6:26595746..26599191,6	K562	blood:
30	chr12:49524720..49525703-chr6:26157669..26158244,2	NB4	blood:
31	chr6:26157437..26158150-chr9:94233433..94234453,4	HCT-116	colon:
32	chr3:12881583..12883296-chr6:26156021..26158095,2	MCF-7	breast:
33	chr2:122288053..122289025-chr6:26157732..26158561,3	HCT-116	colon:
34	chr17:16341470..16342422-chr6:26156642..26157879,3	Hela-S3	cervix:
35	chr10:30722148..30722782-chr6:26157234..26157951,2	Hela-S3	cervix:
36	chr6:26155325..26157964-chr6:27797146..27799688,3	MCF-7	breast:
37	chr6:26124491..26125367-chr6:26157372..26158307,5	MCF-7	breast:
38	chr6:26156108..26158898-chr6:27832756..27836611,3	MCF-7	breast:
39	chr6:26157408..26158403-chr8:41435319..41436198,2	HCT-116	colon:
40	chr6:26123627..26125056-chr6:26157699..26158576,4	Hela-S3	cervix:
41	chr6:26157275..26158029-chr9:131709966..131710746,2	Hela-S3	cervix:
42	chr19:47291523..47292293-chr6:26157471..26158246,2	NB4	blood:
43	chr6:26157754..26159719-chrX:40035587..40037677,2	K562	blood:
44	chr17:79485862..79487971-chr6:26155801..26157988,2	MCF-7	breast:
45	chr6:26157535..26158525-chr6:30524230..30524818,2	Hela-S3	cervix:
46	chr19:37063683..37064472-chr6:26157628..26158250,2	Hela-S3	cervix:
47	chr11:64781081..64781907-chr6:26157581..26158278,2	NB4	blood:
48	chr17:39844898..39846717-chr6:26157632..26159911,2	MCF-7	breast:
49	chr2:202316306..202317114-chr6:26157399..26157967,2	Hela-S3	cervix:
50	chr6:26157379..26158281-chr8:38088459..38089435,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
HIST1H2BD	TF binding region
ENSG00000266077	Chromatin interaction
ENSG00000082146	Chromatin interaction
ENSG00000073670	Chromatin interaction
ENSG00000196226	Chromatin interaction
ENSG00000063176	Chromatin interaction
ENSG00000149743	Chromatin interaction
ENSG00000102921	Chromatin interaction
ENSG00000172380	Chromatin interaction
ENSG00000163660	Chromatin interaction
ENSG00000199004	Chromatin interaction
ENSG00000199289	Chromatin interaction
ENSG00000103353	Chromatin interaction
ENSG00000272822	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000137259	Chromatin interaction
ENSG00000188725	Chromatin interaction
ENSG00000063046	Chromatin interaction
ENSG00000186020	Chromatin interaction
ENSG00000197622	Chromatin interaction
ENSG00000134333	Chromatin interaction
ENSG00000095319	Chromatin interaction
ENSG00000178971	Chromatin interaction
ENSG00000173812	Chromatin interaction
ENSG00000272870	Chromatin interaction
ENSG00000163946	Chromatin interaction
ENSG00000063177	Chromatin interaction
ENSG00000158669	Chromatin interaction
ENSG00000264229	Chromatin interaction
ENSG00000273210	Chromatin interaction
ENSG00000203724	Chromatin interaction
ENSG00000196787	Chromatin interaction
ENSG00000188486	Chromatin interaction
ENSG00000146109	Chromatin interaction
ENSG00000179388	Chromatin interaction
ENSG00000182952	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000177508	Chromatin interaction
ENSG00000178188	Chromatin interaction
ENSG00000225361	Chromatin interaction
ENSG00000196422	Chromatin interaction
ENSG00000082641	Chromatin interaction
ENSG00000207496	Chromatin interaction
ENSG00000168906	Chromatin interaction
ENSG00000165185	Chromatin interaction
ENSG00000105281	Chromatin interaction
ENSG00000102786	Chromatin interaction
ENSG00000197238	Chromatin interaction
ENSG00000268798	Chromatin interaction
ENSG00000105011	Chromatin interaction
ENSG00000267751	Chromatin interaction
ENSG00000113369	Chromatin interaction
ENSG00000203499	Chromatin interaction
ENSG00000125691	Chromatin interaction
ENSG00000123416	Chromatin interaction
ENSG00000149761	Chromatin interaction
ENSG00000143878	Chromatin interaction
ENSG00000197409	Chromatin interaction
ENSG00000198752	Chromatin interaction
ENSG00000174013	Chromatin interaction
ENSG00000115268	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000143079	Chromatin interaction
ENSG00000108106	Chromatin interaction
ENSG00000161040	Chromatin interaction
ENSG00000270006	Chromatin interaction
ENSG00000196176	Chromatin interaction
ENSG00000184357	Chromatin interaction
ENSG00000145592	Chromatin interaction
ENSG00000258017	Chromatin interaction
ENSG00000227195	Chromatin interaction
ENSG00000143376	Chromatin interaction
ENSG00000103356	Chromatin interaction
ENSG00000163191	Chromatin interaction
ENSG00000140396	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000246705	Chromatin interaction
ENSG00000143458	Chromatin interaction
ENSG00000182768	Chromatin interaction
ENSG00000230185	Chromatin interaction
ENSG00000145632	Chromatin interaction
ENSG00000026950	Chromatin interaction
ENSG00000185798	Chromatin interaction
ENSG00000101654	Chromatin interaction
ENSG00000225721	Chromatin interaction
ENSG00000204576	Chromatin interaction
ENSG00000110092	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000170632	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000066135	Chromatin interaction
ENSG00000224843	Chromatin interaction
ENSG00000213465	Chromatin interaction
ENSG00000156860	Chromatin interaction
ENSG00000113240	Chromatin interaction
ENSG00000233527	Chromatin interaction
ENSG00000135047	Chromatin interaction
ENSG00000077458	Chromatin interaction
ENSG00000221566	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000241549	Chromatin interaction
ENSG00000124693	Chromatin interaction
ENSG00000198339	Chromatin interaction
ENSG00000039319	Chromatin interaction
ENSG00000115875	Chromatin interaction
ENSG00000065883	Chromatin interaction
ENSG00000117289	Chromatin interaction
ENSG00000198162	Chromatin interaction
ENSG00000006125	Chromatin interaction
ENSG00000175155	Chromatin interaction
ENSG00000197914	Chromatin interaction
ENSG00000198374	Chromatin interaction
ENSG00000184254	Chromatin interaction
ENSG00000085788	Chromatin interaction
ENSG00000273003	Chromatin interaction
ENSG00000198366	Chromatin interaction
ENSG00000233822	Chromatin interaction
ENSG00000177150	Chromatin interaction
ENSG00000166037	Chromatin interaction
ENSG00000204256	Chromatin interaction
ENSG00000142409	Chromatin interaction
ENSG00000236778	Chromatin interaction
ENSG00000234816	Chromatin interaction
ENSG00000197846	Chromatin interaction
ENSG00000203813	Chromatin interaction
ENSG00000143751	Chromatin interaction
ENSG00000124529	Chromatin interaction
ENSG00000134287	Chromatin interaction
ENSG00000260456	Chromatin interaction
ENSG00000198805	Chromatin interaction
ENSG00000101084	Chromatin interaction
ENSG00000137478	Chromatin interaction
ENSG00000183337	Chromatin interaction
ENSG00000180596	Chromatin interaction
ENSG00000136811	Chromatin interaction
ENSG00000180573	Chromatin interaction
ENSG00000152620	Chromatin interaction
ENSG00000196532	Chromatin interaction
ENSG00000165527	Chromatin interaction
ENSG00000238331	Chromatin interaction
ENSG00000198369	Chromatin interaction
ENSG00000124198	Chromatin interaction
ENSG00000182611	Chromatin interaction
ENSG00000196866	Chromatin interaction
ENSG00000156398	Chromatin interaction
ENSG00000124216	Chromatin interaction
ENSG00000259826	Chromatin interaction
ENSG00000065911	Chromatin interaction
ENSG00000074054	Chromatin interaction
ENSG00000264294	Chromatin interaction
ENSG00000196374	Chromatin interaction
ENSG00000222414	Chromatin interaction
ENSG00000152348	Chromatin interaction
ENSG00000184348	Chromatin interaction
ENSG00000151422	Chromatin interaction
ENSG00000131043	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000197451	Chromatin interaction
ENSG00000174371	Chromatin interaction
ENSG00000263843	Chromatin interaction
ENSG00000204623	Chromatin interaction
ENSG00000130159	Chromatin interaction
ENSG00000175061	Chromatin interaction
ENSG00000130045	Chromatin interaction
ENSG00000223837	Chromatin interaction
ENSG00000199568	Chromatin interaction
ENSG00000229848	Chromatin interaction
ENSG00000112245	Chromatin interaction
ENSG00000177889	Chromatin interaction
ENSG00000059804	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000197603	Chromatin interaction
ENSG00000124635	Chromatin interaction
ENSG00000090316	Chromatin interaction
ENSG00000253133	Chromatin interaction
ENSG00000144713	Chromatin interaction
ENSG00000243660	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000126456	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000250734	Chromatin interaction
ENSG00000187837	Chromatin interaction
ENSG00000175581	Chromatin interaction
ENSG00000033627	Chromatin interaction
ENSG00000105401	Chromatin interaction
ENSG00000126453	Chromatin interaction
ENSG00000142937	Chromatin interaction
ENSG00000169991	Chromatin interaction
ENSG00000100650	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11966360	0.83[CEU][hapmap]
rs1417998	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34661691	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6456710	1.00[CHB][hapmap]
rs6919303	1.00[ASN][1000 genomes]
rs6925088	1.00[ASN][1000 genomes]
rs7749823	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.87[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1030351	chr6:25813178-26352046	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1189 gene(s)	inside rSNPs	diseases
4	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
5	nsv1025237	chr6:25874326-26280867	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
6	nsv538163	chr6:25874326-26280867	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
7	nsv1028456	chr6:25984457-26174993	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	873 gene(s)	inside rSNPs	diseases
8	nsv538165	chr6:25984457-26174993	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	873 gene(s)	inside rSNPs	diseases
9	nsv428137	chr6:25987413-26351920	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1181 gene(s)	inside rSNPs	diseases
10	nsv916992	chr6:25991630-26280921	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1159 gene(s)	inside rSNPs	diseases
11	nsv1028232	chr6:26005449-26319756	Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1171 gene(s)	inside rSNPs	diseases
12	nsv870314	chr6:26008435-26280807	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1151 gene(s)	inside rSNPs	diseases
13	nsv1023457	chr6:26014014-26305407	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1170 gene(s)	inside rSNPs	diseases
14	nsv1025493	chr6:26026870-26223838	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1001 gene(s)	inside rSNPs	diseases
15	nsv1023979	chr6:26026870-26287399	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1113 gene(s)	inside rSNPs	diseases
16	nsv1015782	chr6:26026870-26323895	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1114 gene(s)	inside rSNPs	diseases
17	nsv1018665	chr6:26026870-26352046	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1116 gene(s)	inside rSNPs	diseases
18	nsv482348	chr6:26082709-26261136	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	799 gene(s)	inside rSNPs	diseases
19	nsv518431	chr6:26148311-26211368	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	521 gene(s)	inside rSNPs	diseases
20	nsv526456	chr6:26148311-26211368	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	521 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs3857546	BTN3A2	cis	lymphoblastoid	GTEx
rs3857546	BTN3A2	cis	Muscle Skeletal	GTEx
rs3857546	ZNF193	cis	parietal	SCAN
rs3857546	ACOT13	cis	cerebellum	SCAN
rs3857546	BTN3A2///BTN3A3	Cis_1M	lymphoblastoid	RTeQTL
rs3857546	BTN3A2	cis	Whole Blood	GTEx
rs3857546	BTN3A2	cis	lymphoblastoid	seeQTL
rs3857546	BTN3A2	Cis_1M	lymphoblastoid	RTeQTL
rs3857546	BTN3A2	cis	Artery Aorta	GTEx
rs3857546	TRIM38	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26155400-26160800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:26155600-26159600	Active TSS	Fetal Lung	lung
3	chr6:26155600-26159600	Active TSS	Psoas Muscle	Psoas
4	chr6:26155600-26159800	Active TSS	Fetal Kidney	kidney
5	chr6:26155600-26159800	Active TSS	HSMMtube	muscle
6	chr6:26155600-26160000	Active TSS	Brain Cingulate Gyrus	brain
7	chr6:26155600-26160600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:26155600-26160800	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr6:26155800-26157800	Active TSS	Brain Hippocampus Middle	brain
10	chr6:26155800-26157800	Active TSS	Fetal Brain Male	brain
11	chr6:26155800-26158800	Active TSS	K562	blood
12	chr6:26155800-26159600	Active TSS	Colon Smooth Muscle	Colon
13	chr6:26155800-26159600	Active TSS	Right Ventricle	heart
14	chr6:26155800-26159600	Active TSS	Sigmoid Colon	Sigmoid Colon
15	chr6:26155800-26159800	Active TSS	Breast Myoepithelial Primary Cells	Breast
16	chr6:26155800-26159800	Active TSS	Duodenum Smooth Muscle	Duodenum
17	chr6:26155800-26160000	Active TSS	H9 Cell Line	embryonic stem cell
18	chr6:26155800-26160000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:26155800-26160000	Active TSS	Placenta Amnion	Placenta Amnion
20	chr6:26155800-26160200	Active TSS	HUES6 Cell Line	embryonic stem cell
21	chr6:26155800-26160200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:26155800-26160200	Active TSS	Brain Inferior Temporal Lobe	brain
23	chr6:26155800-26160200	Active TSS	Fetal Intestine Large	intestine
24	chr6:26155800-26160200	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr6:26155800-26160200	Active TSS	A549	lung
26	chr6:26155800-26160200	Active TSS	HSMM	muscle
27	chr6:26155800-26160400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
28	chr6:26155800-26160400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:26155800-26160400	Active TSS	HUES48 Cell Line	embryonic stem cell
30	chr6:26155800-26160400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:26155800-26160400	Active TSS	Pancreas	Pancrea
32	chr6:26155800-26160600	Active TSS	H1 Cell Line	embryonic stem cell
33	chr6:26155800-26160600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:26155800-26160600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr6:26155800-26160600	Active TSS	iPS-15b Cell Line	embryonic stem cell
36	chr6:26155800-26160800	Active TSS	ES-I3 Cell Line	embryonic stem cell
37	chr6:26155800-26160800	Active TSS	Colonic Mucosa	Colon
38	chr6:26155800-26161200	Active TSS	Thymus	Thymus
39	chr6:26156000-26159000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr6:26156000-26159600	Active TSS	Left Ventricle	heart
41	chr6:26156000-26159600	Active TSS	Rectal Smooth Muscle	rectum
42	chr6:26156000-26159800	Active TSS	Primary B cells from peripheral blood	blood
43	chr6:26156000-26159800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
44	chr6:26156000-26159800	Active TSS	Primary T helper naive cells from peripheral blood	blood
45	chr6:26156000-26159800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:26156000-26159800	Active TSS	Brain Anterior Caudate	brain
47	chr6:26156000-26159800	Active TSS	HMEC	breast
48	chr6:26156000-26160000	Active TSS	Primary T killer memory cells from peripheral blood	blood
49	chr6:26156000-26160000	Active TSS	Stomach Mucosa	stomach
50	chr6:26156000-26160200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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