Variant report

Variant	rs6925088
Chromosome Location	chr6:26204185-26204186
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:36)
CpG islands
(count:0)
Chromatin interactive
region (count:30)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:36 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:26203000-26208312	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr6:26187684-26208312	K562	blood:	n/a	n/a
3	POLR2A	chr6:26203926-26207116	K562	blood:	n/a	n/a
4	MYBL2	chr6:26204160-26205923	HepG2	liver:	n/a	n/a
5	UBTF	chr6:26204038-26205817	K562	blood:	n/a	n/a
6	PML	chr6:26204185-26206832	K562	blood:	n/a	chr6:26204455-26204463
7	TAF1	chr6:26204083-26206324	H1-hESC	embryonic stem cell:	n/a	n/a
8	HEY1	chr6:26203921-26208043	K562	blood:	n/a	chr6:26204707-26204716 chr6:26204705-26204714
9	JUND	chr6:26204112-26207064	SK-N-SH	brain:	n/a	chr6:26204706-26204715
10	POLR2A	chr6:26203936-26206974	K562	blood:	n/a	n/a
11	PML	chr6:26202961-26206791	K562	blood:	n/a	chr6:26204455-26204463
12	JUN	chr6:26203048-26206952	K562	blood:	n/a	chr6:26206299-26206312 chr6:26204705-26204718 chr6:26204706-26204715
13	REST	chr6:26204098-26205235	K562	blood:	n/a	n/a
14	NR2F2	chr6:26203285-26207163	K562	blood:	n/a	n/a
15	CHD1	chr6:26203827-26207028	IMR90	lung:	n/a	n/a
16	HMGN3	chr6:26204016-26205256	K562	blood:	n/a	n/a
17	POLR2A	chr6:26203106-26208333	K562	blood:	n/a	n/a
18	POLR2A	chr6:26203918-26207387	H1-hESC	embryonic stem cell:	n/a	n/a
19	TAF7	chr6:26203838-26207399	H1-hESC	embryonic stem cell:	n/a	n/a
20	POLR2A	chr6:26186607-26208345	K562	blood:	n/a	n/a
21	TAF1	chr6:26204000-26204585	K562	blood:	n/a	n/a
22	POLR2A	chr6:26204014-26207074	MCF-7	breast:	n/a	n/a
23	RUNX3	chr6:26204166-26206536	GM12878	blood:	n/a	n/a
24	POLR2A	chr6:26204135-26206941	H1-neurons	neurons:	n/a	n/a
25	POLR2A	chr6:26204166-26206821	PANC-1	pancreas:	n/a	n/a
26	TEAD4	chr6:26203048-26206954	K562	blood:	n/a	n/a
27	MYBL2	chr6:26204164-26206260	HepG2	liver:	n/a	n/a
28	REST	chr6:26203882-26208210	H1-neurons	neurons:	n/a	n/a
29	TAF1	chr6:26203892-26206436	H1-hESC	embryonic stem cell:	n/a	n/a
30	JUND	chr6:26204175-26206925	GM12878	blood:	n/a	chr6:26204706-26204715
31	POLR2A	chr6:26204050-26207426	H1-hESC	embryonic stem cell:	n/a	n/a
32	POLR2A	chr6:26203910-26207100	K562	blood:	n/a	n/a
33	SIN3AK20	chr6:26204096-26205318	K562	blood:	n/a	n/a
34	MAX	chr6:26204098-26205956	A549	lung:	n/a	n/a
35	SIN3AK20	chr6:26204184-26207033	MCF-7	breast:	n/a	n/a
36	BCLAF1	chr6:26201050-26207393	K562	blood:	n/a	chr6:26201585-26201594 chr6:26204683-26204696

No data

(count:30 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:26203350..26205090-chr6:27099738..27102062,2	MCF-7	breast:
2	chr6:26203848..26208105-chr6:27113189..27116345,6	MCF-7	breast:
3	chr6:26026421..26028789-chr6:26203336..26205903,2	MCF-7	breast:
4	chr6:26019231..26022068-chr6:26204049..26206272,3	MCF-7	breast:
5	chr6:26201617..26205446-chr6:27775076..27778001,4	K562	blood:
6	chr6:16238757..16240656-chr6:26203889..26205752,2	K562	blood:
7	chr21:43784816..43787637-chr6:26203618..26206285,2	MCF-7	breast:
8	chr6:26196890..26209578-chr6:27096615..27108451,46	K562	blood:
9	chr6:26201657..26204430-chr6:27803737..27806295,2	K562	blood:
10	chr6:26202461..26206307-chr6:27111685..27116147,8	K562	blood:
11	chr6:26203030..26208239-chr6:27858574..27863151,12	MCF-7	breast:
12	chr6:26203154..26204718-chr6:26537605..26540398,2	K562	blood:
13	chr20:52824540..52826280-chr6:26204006..26206221,2	MCF-7	breast:
14	chr20:18486697..18489391-chr6:26203870..26205427,2	MCF-7	breast:
15	chr2:238394029..238396506-chr6:26203344..26206529,3	MCF-7	breast:
16	chr6:26195729..26208268-chr6:27092660..27105612,50	K562	blood:
17	chr17:41463769..41466376-chr6:26204076..26206322,2	K562	blood:
18	chr6:26203843..26208171-chr6:27113293..27116172,4	MCF-7	breast:
19	chr1:149856931..149859975-chr6:26202139..26205611,5	MCF-7	breast:
20	chr6:26202344..26207712-chr6:27112121..27116672,11	K562	blood:
21	chr6:26203687..26207464-chr6:26521178..26524047,5	K562	blood:
22	chr6:26200995..26208208-chr6:27098278..27102268,10	MCF-7	breast:
23	chr17:63051178..63053985-chr6:26202995..26205801,2	MCF-7	breast:
24	chr6:26201557..26204419-chr6:27859864..27863370,3	K562	blood:
25	chr6:26201927..26205994-chr6:27859683..27862837,3	K562	blood:
26	chr6:26203034..26206484-chr6:27789284..27793104,6	MCF-7	breast:
27	chr6:26203418..26208290-chr6:27773529..27778557,7	MCF-7	breast:
28	chr6:26197916..26207803-chr6:27772547..27779655,13	K562	blood:
29	chr6:26031804..26034805-chr6:26202147..26206144,5	MCF-7	breast:
30	chr6:26202930..26204758-chr6:27804795..27807799,3	K562	blood:

No data

Variant related genes	Relation type
HIST1H2AD	TF binding region
HIST1H4E	TF binding region
HIST1H3D	TF binding region
ENSG00000137198	Chromatin interaction
ENSG00000196747	Chromatin interaction
ENSG00000197238	Chromatin interaction
ENSG00000228223	Chromatin interaction
ENSG00000203813	Chromatin interaction
ENSG00000198339	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000115648	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000160182	Chromatin interaction
ENSG00000198366	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000182952	Chromatin interaction
ENSG00000101310	Chromatin interaction
ENSG00000101132	Chromatin interaction
ENSG00000137259	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000196176	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000233822	Chromatin interaction
ENSG00000217862	Chromatin interaction
ENSG00000185130	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000124529	Chromatin interaction
ENSG00000124635	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000124693	Chromatin interaction
ENSG00000120063	Chromatin interaction
ENSG00000188825	Chromatin interaction
ENSG00000196787	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000184348	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1417998	1.00[ASN][1000 genomes]
rs3857546	1.00[ASN][1000 genomes]
rs6919303	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749823	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1030351	chr6:25813178-26352046	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1189 gene(s)	inside rSNPs	diseases
4	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
5	nsv1025237	chr6:25874326-26280867	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
6	nsv538163	chr6:25874326-26280867	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
7	nsv428137	chr6:25987413-26351920	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1181 gene(s)	inside rSNPs	diseases
8	nsv916992	chr6:25991630-26280921	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1159 gene(s)	inside rSNPs	diseases
9	nsv1028232	chr6:26005449-26319756	Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1171 gene(s)	inside rSNPs	diseases
10	nsv870314	chr6:26008435-26280807	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1151 gene(s)	inside rSNPs	diseases
11	nsv1023457	chr6:26014014-26305407	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1170 gene(s)	inside rSNPs	diseases
12	nsv1025493	chr6:26026870-26223838	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1001 gene(s)	inside rSNPs	diseases
13	nsv1023979	chr6:26026870-26287399	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1113 gene(s)	inside rSNPs	diseases
14	nsv1015782	chr6:26026870-26323895	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1114 gene(s)	inside rSNPs	diseases
15	nsv1018665	chr6:26026870-26352046	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1116 gene(s)	inside rSNPs	diseases
16	nsv482348	chr6:26082709-26261136	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	799 gene(s)	inside rSNPs	diseases
17	nsv518431	chr6:26148311-26211368	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	521 gene(s)	inside rSNPs	diseases
18	nsv526456	chr6:26148311-26211368	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	521 gene(s)	inside rSNPs	diseases
19	nsv883490	chr6:26172219-26231608	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	316 gene(s)	inside rSNPs	diseases
20	nsv1021294	chr6:26190316-26246784	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	309 gene(s)	inside rSNPs	diseases
21	nsv969356	chr6:26199899-26204393	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26200200-26204200	Weak transcription	Left Ventricle	heart
2	chr6:26200200-26204200	Weak transcription	Spleen	Spleen
3	chr6:26200200-26204400	Weak transcription	Lung	lung
4	chr6:26200400-26204200	Weak transcription	Aorta	Aorta
5	chr6:26200400-26204200	Weak transcription	HSMM	muscle
6	chr6:26200600-26204200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:26200600-26204200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:26200600-26204200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr6:26200600-26204200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:26200600-26204400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:26200800-26204200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr6:26200800-26204200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:26200800-26204200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:26200800-26204200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr6:26200800-26204200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:26200800-26204200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr6:26200800-26204200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr6:26200800-26204200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr6:26200800-26204200	Weak transcription	Fetal Brain Male	brain
20	chr6:26200800-26204200	Weak transcription	Small Intestine	intestine
21	chr6:26200800-26204200	Weak transcription	NHLF	lung
22	chr6:26201000-26204200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr6:26201000-26204200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr6:26201000-26204200	Enhancers	GM12878-XiMat	blood
25	chr6:26201600-26204200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:26201600-26204200	Weak transcription	HepG2	liver
27	chr6:26202800-26204200	Enhancers	Primary B cells from cord blood	blood
28	chr6:26203200-26204200	Enhancers	Primary B cells from peripheral blood	blood
29	chr6:26203400-26204200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:26203400-26204200	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr6:26203400-26204200	Enhancers	Primary T cells from cord blood	blood
32	chr6:26203400-26206400	Active TSS	HUES6 Cell Line	embryonic stem cell
33	chr6:26203400-26207200	Active TSS	ES-I3 Cell Line	embryonic stem cell
34	chr6:26203400-26207600	Active TSS	Thymus	Thymus
35	chr6:26203400-26207800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:26203600-26204200	Enhancers	Primary hematopoietic stem cells	blood
37	chr6:26203600-26205200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:26203600-26206400	Active TSS	K562	blood
39	chr6:26203600-26207000	Active TSS	H9 Cell Line	embryonic stem cell
40	chr6:26203800-26204200	Enhancers	Primary neutrophils fromperipheralblood	blood
41	chr6:26203800-26204200	Enhancers	Primary T helper cells fromperipheralblood	blood
42	chr6:26203800-26204200	Enhancers	Hela-S3	cervix
43	chr6:26203800-26204200	Weak transcription	NHEK	skin
44	chr6:26203800-26204400	Flanking Active TSS	Fetal Brain Female	brain
45	chr6:26203800-26204600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr6:26203800-26205000	Active TSS	Brain Germinal Matrix	brain
47	chr6:26203800-26207000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr6:26203800-26207000	Active TSS	iPS-18 Cell Line	embryonic stem cell
49	chr6:26203800-26207000	Active TSS	Fetal Kidney	kidney
50	chr6:26203800-26207200	Active TSS	HUES48 Cell Line	embryonic stem cell

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