Variant report

Variant	rs3857946
Chromosome Location	chr8:125606254-125606255
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:125603929..125607098-chr8:125608646..125611096,3	MCF-7	breast:
2	chr8:125605731..125607581-chr8:125735892..125738512,2	MCF-7	breast:
3	chr8:125549390..125552264-chr8:125603612..125607617,4	MCF-7	breast:
4	chr8:125602405..125607045-chr8:125825769..125829252,7	K562	blood:
5	chr8:125605123..125607316-chr8:125865948..125867968,2	MCF-7	breast:
6	chr8:125603844..125606366-chr8:125762681..125764828,2	MCF-7	breast:
7	chr3:184113391..184114998-chr8:125605420..125608346,2	MCF-7	breast:
8	chr8:125605311..125606257-chr8:125646877..125647660,2	MCF-7	breast:
9	chr8:125602831..125606527-chr8:125825901..125829225,5	K562	blood:
10	chr8:125605911..125607972-chr8:125612468..125615262,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000255491	Chromatin interaction
ENSG00000147687	Chromatin interaction
ENSG00000147684	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10046739	0.89[CEU][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs10107762	1.00[ASW][hapmap];0.89[CEU][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs11994108	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11994203	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs13248930	0.89[MKK][hapmap]
rs13251109	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs13258027	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13261695	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs16899660	1.00[ASW][hapmap]
rs16899708	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs16899748	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs35314147	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4007921	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs67077163	0.83[EUR][1000 genomes]

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125574400-125609400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr8:125584400-125617200	Weak transcription	Colonic Mucosa	Colon
3	chr8:125585400-125609000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:125593600-125606800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr8:125596200-125616400	Weak transcription	HSMMtube	muscle
6	chr8:125596400-125609800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:125597200-125607000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr8:125602000-125620400	Weak transcription	HMEC	breast
9	chr8:125603000-125616800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr8:125603200-125606600	Weak transcription	Lung	lung
11	chr8:125603200-125607800	Weak transcription	NHEK	skin
12	chr8:125603400-125606400	Weak transcription	Fetal Stomach	stomach
13	chr8:125603400-125609200	Weak transcription	Fetal Intestine Large	intestine
14	chr8:125603400-125612000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:125603400-125612600	Weak transcription	NHLF	lung
16	chr8:125603400-125612800	Weak transcription	Gastric	stomach
17	chr8:125603400-125617000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr8:125603400-125617400	Weak transcription	Esophagus	oesophagus
19	chr8:125603400-125625800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr8:125603600-125606400	Weak transcription	Fetal Muscle Trunk	muscle
21	chr8:125603600-125607200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr8:125603600-125607600	Weak transcription	Fetal Intestine Small	intestine
23	chr8:125603600-125609000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr8:125603600-125609000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr8:125603600-125611800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr8:125603600-125612000	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr8:125604400-125606400	Enhancers	Fetal Brain Female	brain
28	chr8:125604400-125607000	Enhancers	Fetal Thymus	thymus
29	chr8:125604400-125608400	Enhancers	Liver	Liver
30	chr8:125604400-125609000	Enhancers	Primary T cells from cord blood	blood
31	chr8:125604600-125607000	Enhancers	Thymus	Thymus
32	chr8:125605000-125606400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr8:125605000-125606600	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr8:125605000-125606600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr8:125605000-125606800	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr8:125605000-125606800	Enhancers	Dnd41	blood
37	chr8:125605000-125606800	Enhancers	HUVEC	blood vessel
38	chr8:125605000-125607000	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr8:125605000-125607000	Enhancers	Brain Substantia Nigra	brain
40	chr8:125605000-125607400	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr8:125605000-125607800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr8:125605000-125608000	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr8:125605000-125608200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
44	chr8:125605000-125608400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
45	chr8:125605000-125608600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
46	chr8:125605000-125608600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr8:125605000-125608800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr8:125605000-125609000	Enhancers	Primary T cells fromperipheralblood	blood
49	chr8:125605000-125609000	Enhancers	Primary T helper cells fromperipheralblood	blood
50	chr8:125605000-125609200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links