Variant report

Variant	rs3861403
Chromosome Location	chr6:145332706-145332707
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1012099	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1012100	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11155391	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1890472	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1933927	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1933928	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2019545	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2068343	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2153140	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2876601	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3966674	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4895665	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4896769	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6570669	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6913592	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6924480	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7450643	0.86[EUR][1000 genomes]
rs7741672	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7754511	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9322018	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9376890	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9376891	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9399529	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9497171	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs951020	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv886742	chr6:145269757-145376903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145328400-145339200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:145329000-145332800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:145329000-145333200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:145331000-145336800	Weak transcription	HSMM	muscle
5	chr6:145332000-145333200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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