Variant report

Variant	rs951020
Chromosome Location	chr6:145325798-145325799
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1012099	0.83[EUR][1000 genomes]
rs1012100	0.82[EUR][1000 genomes]
rs11155391	0.82[EUR][1000 genomes]
rs1890472	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1933927	0.83[EUR][1000 genomes]
rs1933928	0.82[EUR][1000 genomes]
rs2019545	0.83[EUR][1000 genomes]
rs2153140	0.83[EUR][1000 genomes]
rs3861403	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3966674	0.83[EUR][1000 genomes]
rs4895665	0.83[EUR][1000 genomes]
rs4896769	0.82[EUR][1000 genomes]
rs6913592	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7450643	0.87[EUR][1000 genomes]
rs9322018	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9376890	0.83[EUR][1000 genomes]
rs9376891	0.83[EUR][1000 genomes]
rs9390273	0.81[EUR][1000 genomes]
rs9399529	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv886742	chr6:145269757-145376903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145324200-145326000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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