Variant report

Variant	rs3862737
Chromosome Location	chr13:52174719-52174720
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:52174013..52176173-chr13:52177429..52180308,2	K562	blood:
2	chr13:52156993..52158950-chr13:52173357..52176105,2	K562	blood:
3	chr13:52026237..52028363-chr13:52172790..52175398,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000224892	Chromatin interaction
ENSG00000102786	Chromatin interaction
ENSG00000236778	Chromatin interaction
ENSG00000139668	Chromatin interaction

rs_ID	r²[population]
rs4993822	0.94[LWK][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes]
rs617452	1.00[EUR][1000 genomes]
rs6561642	1.00[EUR][1000 genomes]
rs912097	0.88[YRI][hapmap];1.00[AMR][1000 genomes]

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52160200-52181400	Weak transcription	Thymus	Thymus
2	chr13:52160400-52177000	Weak transcription	Right Ventricle	heart
3	chr13:52162800-52180200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr13:52163200-52182600	Weak transcription	Ovary	ovary
5	chr13:52165600-52188600	Weak transcription	Fetal Stomach	stomach
6	chr13:52165800-52179000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr13:52166000-52175800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr13:52166000-52176400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr13:52166000-52181200	Weak transcription	NH-A	brain
10	chr13:52166200-52175600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr13:52166200-52178800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr13:52166200-52181200	Weak transcription	NHLF	lung
13	chr13:52166400-52176200	Weak transcription	Osteobl	bone
14	chr13:52166400-52181200	Weak transcription	Hela-S3	cervix
15	chr13:52167600-52179800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr13:52168400-52177400	Weak transcription	Lung	lung
17	chr13:52168400-52194400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr13:52168600-52177600	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr13:52169800-52176000	Weak transcription	Primary T cells from cord blood	blood
20	chr13:52169800-52179600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr13:52169800-52187000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr13:52169800-52188600	Weak transcription	Esophagus	oesophagus
23	chr13:52169800-52188600	Weak transcription	Gastric	stomach
24	chr13:52170000-52175000	Enhancers	HepG2	liver
25	chr13:52170800-52174800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr13:52171000-52176800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr13:52171000-52180000	Weak transcription	Psoas Muscle	Psoas
28	chr13:52171200-52175800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr13:52171200-52175800	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr13:52171200-52176200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr13:52171200-52176200	Weak transcription	A549	lung
32	chr13:52171400-52177400	Weak transcription	HMEC	breast
33	chr13:52171800-52175600	Weak transcription	HSMM	muscle
34	chr13:52171800-52177000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr13:52171800-52179000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr13:52172600-52174800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr13:52172600-52175400	Enhancers	Brain Substantia Nigra	brain
38	chr13:52172800-52175800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr13:52173200-52175000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr13:52173200-52175000	Enhancers	Brain Hippocampus Middle	brain
41	chr13:52173200-52176800	Enhancers	Primary hematopoietic stem cells	blood
42	chr13:52173200-52177200	Enhancers	Primary neutrophils fromperipheralblood	blood
43	chr13:52173400-52174800	Enhancers	Brain Angular Gyrus	brain
44	chr13:52173400-52174800	Enhancers	GM12878-XiMat	blood
45	chr13:52173400-52175000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr13:52173400-52175000	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr13:52173400-52175000	Enhancers	Brain Anterior Caudate	brain
48	chr13:52173400-52175000	Enhancers	Brain Cingulate Gyrus	brain
49	chr13:52173400-52175200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
50	chr13:52173400-52175200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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