Variant report

Variant	rs617452
Chromosome Location	chr13:52137067-52137068
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs3862737	1.00[EUR][1000 genomes]
rs6561642	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6561647	1.00[AMR][1000 genomes]
rs74086279	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797261	chr13:52100949-52139113	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52131000-52138800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr13:52133400-52138800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr13:52133600-52137800	Weak transcription	Hela-S3	cervix
4	chr13:52136000-52137200	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr13:52136400-52138000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr13:52136800-52137200	Enhancers	GM12878-XiMat	blood
7	chr13:52137000-52139000	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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