Variant report

Variant	rs3864217
Chromosome Location	chr4:7380740-7380741
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:7379670..7381494-chr4:7386089..7388164,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10029954	0.84[ASN][1000 genomes]
rs13353773	1.00[MEX][hapmap]
rs3864218	0.91[CHB][hapmap];0.87[CHD][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs41330946	1.00[MEX][hapmap]
rs4365724	1.00[MEX][hapmap]
rs73079985	0.84[ASN][1000 genomes]
rs9291135	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34033	chr4:6973270-7390621	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv432556	chr4:7174993-7391948	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv916610	chr4:7238883-7731946	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv593569	chr4:7291363-7626136	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1011547	chr4:7318232-7637410	Active TSS ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	nsv537017	chr4:7318232-7637410	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1003679	chr4:7319111-7449262	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1012289	chr4:7361958-7395292	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv469758	chr4:7370083-7546250	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7368200-7383000	Weak transcription	Right Atrium	heart
2	chr4:7373000-7383400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:7377600-7381000	Weak transcription	Fetal Thymus	thymus
4	chr4:7378000-7384000	Weak transcription	Fetal Brain Female	brain
5	chr4:7379200-7381000	Weak transcription	Brain Hippocampus Middle	brain
6	chr4:7379200-7381200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:7379200-7381800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr4:7379200-7382200	Weak transcription	Ovary	ovary
9	chr4:7379400-7380800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr4:7379400-7381200	Weak transcription	Brain Substantia Nigra	brain
11	chr4:7379600-7380800	Weak transcription	Brain Angular Gyrus	brain
12	chr4:7379600-7380800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr4:7379600-7381000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr4:7379600-7381000	Weak transcription	Brain Anterior Caudate	brain
15	chr4:7379800-7381400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr4:7380000-7381400	Weak transcription	Brain Germinal Matrix	brain
17	chr4:7380000-7382200	Weak transcription	Fetal Heart	heart
18	chr4:7380200-7383400	Enhancers	Fetal Brain Male	brain
19	chr4:7380400-7381200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr4:7380600-7381600	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links