Variant report
| Variant | rs41330946 |
|---|---|
| Chromosome Location | chr4:7557280-7557281 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:7556337..7557293-chr4:7595770..7596324,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs10001358 | 1.00[EUR][1000 genomes] |
| rs10002144 | 1.00[EUR][1000 genomes] |
| rs10002768 | 1.00[EUR][1000 genomes] |
| rs10804999 | 1.00[EUR][1000 genomes] |
| rs10805000 | 1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs13353773 | 1.00[MEX][hapmap] |
| rs13435331 | 1.00[EUR][1000 genomes] |
| rs1541383 | 1.00[MEX][hapmap] |
| rs16840497 | 1.00[TSI][hapmap] |
| rs16840543 | 1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs16840589 | 1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs16840614 | 1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs16840635 | 1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs16840725 | 1.00[EUR][1000 genomes] |
| rs16840743 | 1.00[EUR][1000 genomes] |
| rs16840756 | 1.00[EUR][1000 genomes] |
| rs3864217 | 1.00[MEX][hapmap] |
| rs4234819 | 1.00[EUR][1000 genomes] |
| rs4234820 | 1.00[EUR][1000 genomes] |
| rs4330351 | 1.00[EUR][1000 genomes] |
| rs4365724 | 1.00[MEX][hapmap] |
| rs4572883 | 1.00[EUR][1000 genomes] |
| rs4689757 | 1.00[EUR][1000 genomes] |
| rs59256904 | 1.00[EUR][1000 genomes] |
| rs6446604 | 1.00[EUR][1000 genomes] |
| rs6446618 | 1.00[TSI][hapmap] |
| rs6834682 | 1.00[MEX][hapmap] |
| rs7683873 | 1.00[EUR][1000 genomes] |
| rs7690364 | 1.00[EUR][1000 genomes] |
| rs7691525 | 1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7692130 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7693764 | 1.00[EUR][1000 genomes] |
| rs871943 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9291135 | 1.00[MEX][hapmap] |
| rs9884448 | 1.00[EUR][1000 genomes] |
| rs9884644 | 1.00[EUR][1000 genomes] |
| rs9884725 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916610 | chr4:7238883-7731946 | Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv593569 | chr4:7291363-7626136 | Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv1011547 | chr4:7318232-7637410 | Active TSS ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv537017 | chr4:7318232-7637410 | Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 5 | esv34156 | chr4:7526515-7750588 | Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 6 | nsv878570 | chr4:7534603-7836835 | Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
