Variant report

Variant	rs6834682
Chromosome Location	chr4:7662630-7662631
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10755155	1.00[TSI][hapmap]
rs13353773	1.00[MEX][hapmap]
rs1541383	1.00[MEX][hapmap]
rs41330946	1.00[MEX][hapmap]
rs4365724	1.00[MEX][hapmap]
rs4459991	1.00[TSI][hapmap]
rs9291135	1.00[MEX][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916610	chr4:7238883-7731946	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	esv34156	chr4:7526515-7750588	Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv878570	chr4:7534603-7836835	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv508272	chr4:7591967-7722112	Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv878571	chr4:7637297-7743283	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7652400-7666000	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr4:7655600-7665200	Weak transcription	Spleen	Spleen
3	chr4:7657400-7670400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr4:7657600-7663200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:7659000-7663000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:7659000-7663400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr4:7659000-7667400	Weak transcription	Brain Hippocampus Middle	brain
8	chr4:7659000-7680800	Weak transcription	Ovary	ovary
9	chr4:7660200-7666000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr4:7660200-7669000	Weak transcription	Brain Anterior Caudate	brain
11	chr4:7660200-7669600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr4:7660400-7666200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr4:7660400-7666800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr4:7660600-7684400	Weak transcription	Brain Angular Gyrus	brain
15	chr4:7660800-7664000	Weak transcription	HepG2	liver
16	chr4:7661600-7684200	Weak transcription	Brain Substantia Nigra	brain
17	chr4:7661800-7662800	Enhancers	Fetal Lung	lung
18	chr4:7662000-7663000	Weak transcription	Liver	Liver
19	chr4:7662200-7663200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr4:7662200-7664200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr4:7662400-7663200	Enhancers	H1 Cell Line	embryonic stem cell
22	chr4:7662400-7664600	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr4:7662400-7665000	Weak transcription	Fetal Brain Female	brain
24	chr4:7662600-7662800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr4:7662600-7664400	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr4:7662600-7666600	Weak transcription	Brain Germinal Matrix	brain

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