Variant report

Variant	rs3864913
Chromosome Location	chr12:9436619-9436620
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:9436030..9436711-chr12:9600583..9601103,2	HCT-116	colon:
2	chr12:9436222..9437012-chr17:48045663..48046428,2	NB4	blood:
3	chr12:9435913..9436700-chr12:31226425..31227148,3	HCT-116	colon:
4	chr12:9436173..9436735-chr12:31226434..31227168,3	Hela-S3	cervix:
5	chr12:9436150..9437103-chr12:9600374..9601086,2	Hela-S3	cervix:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KLRG1-6	chr12:9436616-9436729	NONHSAT026397

Variant related genes	Relation type
ENSG00000013573	Chromatin interaction
ENSG00000108813	Chromatin interaction
ENSG00000245614	Chromatin interaction
ENSG00000214826	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045317	chr12:9113216-9544655	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	nsv1048491	chr12:9208806-9544655	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
3	nsv523958	chr12:9303440-9549072	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
4	nsv557355	chr12:9309995-9529015	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
5	nsv1035953	chr12:9314481-9544655	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
6	nsv427903	chr12:9371593-9830668	Active TSS Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
7	esv2758293	chr12:9371595-9923529	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
8	esv2759878	chr12:9371595-9923529	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
9	nsv916832	chr12:9397450-9693952	ZNF genes & repeats Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
10	nsv976736	chr12:9431362-9524845	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
11	nsv898740	chr12:9436446-9546962	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
12	nsv983274	chr12:9436590-9439756	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9435400-9437800	Active TSS	A549	lung
2	chr12:9435400-9464000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr12:9435600-9437800	Active TSS	Primary hematopoietic stem cells short term culture	blood
4	chr12:9435600-9437800	Active TSS	GM12878-XiMat	blood
5	chr12:9435800-9437000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr12:9435800-9437000	Active TSS	Primary T helper cells fromperipheralblood	blood
7	chr12:9435800-9437000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
8	chr12:9435800-9437000	Active TSS	Brain Anterior Caudate	brain
9	chr12:9435800-9437000	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr12:9435800-9437000	Active TSS	Stomach Smooth Muscle	stomach
11	chr12:9435800-9437200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr12:9435800-9437200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr12:9435800-9437200	Active TSS	Brain Substantia Nigra	brain
14	chr12:9435800-9437200	Active TSS	Duodenum Smooth Muscle	Duodenum
15	chr12:9435800-9437200	Active TSS	NHDF-Ad	bronchial
16	chr12:9435800-9437400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
17	chr12:9435800-9437400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr12:9435800-9437400	Active TSS	Fetal Brain Female	brain
19	chr12:9435800-9437600	Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr12:9435800-9437600	Active TSS	Rectal Mucosa Donor 29	rectum
21	chr12:9435800-9437800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr12:9435800-9437800	Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr12:9435800-9437800	Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr12:9435800-9437800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr12:9435800-9437800	Active TSS	K562	blood
26	chr12:9436000-9436800	Active TSS	Placenta	Placenta
27	chr12:9436000-9437000	Active TSS	Primary monocytes fromperipheralblood	blood
28	chr12:9436000-9437000	Active TSS	Primary B cells from cord blood	blood
29	chr12:9436000-9437000	Active TSS	Primary B cells from peripheral blood	blood
30	chr12:9436000-9437000	Active TSS	Primary T cells fromperipheralblood	blood
31	chr12:9436000-9437000	Active TSS	Primary hematopoietic stem cells	blood
32	chr12:9436000-9437000	Active TSS	Primary T helper naive cells from peripheral blood	blood
33	chr12:9436000-9437000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
34	chr12:9436000-9437000	Active TSS	Cortex derived primary cultured neurospheres	brain
35	chr12:9436000-9437000	Active TSS	Adipose Nuclei	Adipose
36	chr12:9436000-9437000	Active TSS	Brain Angular Gyrus	brain
37	chr12:9436000-9437000	Active TSS	Brain Cingulate Gyrus	brain
38	chr12:9436000-9437000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
39	chr12:9436000-9437000	Active TSS	Fetal Intestine Small	intestine
40	chr12:9436000-9437000	Active TSS	Fetal Stomach	stomach
41	chr12:9436000-9437000	Active TSS	Ovary	ovary
42	chr12:9436000-9437000	Active TSS	Rectal Mucosa Donor 31	rectum
43	chr12:9436000-9437000	Active TSS	Right Atrium	heart
44	chr12:9436000-9437000	Active TSS	HUVEC	blood vessel
45	chr12:9436000-9437000	Active TSS	NHEK	skin
46	chr12:9436000-9437200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr12:9436000-9437200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr12:9436000-9437200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
49	chr12:9436000-9437200	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
50	chr12:9436000-9437200	Active TSS	Aorta	Aorta

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