Variant report

Variant	rs3866736
Chromosome Location	chr14:64458326-64458327
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64457255..64458823-chr14:64462869..64464742,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12588807	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs12878037	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs12881815	0.85[CEU][hapmap]
rs12882429	1.00[CEU][hapmap];0.88[JPT][hapmap]
rs12884607	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12891546	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12891564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17751301	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17824172	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17824268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33976862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34029894	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34215796	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34753731	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34846154	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34902500	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35581544	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3818774	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4459477	0.87[CEU][hapmap];0.86[JPT][hapmap]
rs4899120	0.86[JPT][hapmap]
rs60417638	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8015210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8023195	0.88[JPT][hapmap]
rs9796357	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1038825	chr14:64109441-64491720	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv902020	chr14:64434288-64506541	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64395000-64491000	Weak transcription	Psoas Muscle	Psoas
2	chr14:64416800-64458600	Weak transcription	Gastric	stomach
3	chr14:64417000-64459200	Weak transcription	NHEK	skin
4	chr14:64417000-64466000	Weak transcription	Colon Smooth Muscle	Colon
5	chr14:64417200-64458600	Weak transcription	Esophagus	oesophagus
6	chr14:64417400-64466200	Weak transcription	Right Ventricle	heart
7	chr14:64417600-64459200	Weak transcription	Pancreas	Pancrea
8	chr14:64418000-64463000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:64418400-64458600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr14:64419000-64463000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr14:64419200-64489000	Weak transcription	Small Intestine	intestine
12	chr14:64419400-64459000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr14:64419400-64459200	Weak transcription	HMEC	breast
14	chr14:64420200-64459000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr14:64420600-64462600	Weak transcription	HUVEC	blood vessel
16	chr14:64421600-64466000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr14:64423800-64463000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr14:64428400-64459400	Weak transcription	Aorta	Aorta
19	chr14:64431200-64463800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr14:64431200-64464800	Weak transcription	Stomach Mucosa	stomach
21	chr14:64433400-64465800	Weak transcription	Fetal Heart	heart
22	chr14:64434800-64458600	Weak transcription	Lung	lung
23	chr14:64435200-64471800	Weak transcription	Hela-S3	cervix
24	chr14:64435400-64463600	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr14:64439200-64465600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr14:64439600-64462800	Weak transcription	Fetal Brain Male	brain
27	chr14:64439800-64467800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr14:64440800-64466000	Weak transcription	Primary B cells from peripheral blood	blood
29	chr14:64440800-64480400	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr14:64441600-64467600	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr14:64442400-64491000	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr14:64442800-64458400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr14:64443200-64458400	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr14:64445200-64459600	Weak transcription	Ovary	ovary
35	chr14:64445800-64463800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr14:64446000-64459200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr14:64449200-64458600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr14:64449200-64466200	Weak transcription	Spleen	Spleen
39	chr14:64449600-64459400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr14:64450000-64465800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr14:64452400-64480600	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr14:64452600-64479200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr14:64453400-64458400	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr14:64454000-64459400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr14:64454200-64458400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr14:64454400-64458400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr14:64455600-64458600	Weak transcription	Fetal Intestine Small	intestine
48	chr14:64455800-64458400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr14:64456600-64462800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr14:64456600-64468200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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