Variant report

Variant	rs4899120
Chromosome Location	chr14:64335447-64335448
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12588807	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12588955	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12589453	0.83[ASN][1000 genomes]
rs12878037	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12878348	1.00[ASN][1000 genomes]
rs12879374	0.86[ASN][1000 genomes]
rs12881942	1.00[ASN][1000 genomes]
rs12882429	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12894963	1.00[ASN][1000 genomes]
rs17751301	0.87[CEU][hapmap]
rs17824268	0.86[JPT][hapmap]
rs33976862	0.87[CEU][hapmap];0.85[JPT][hapmap]
rs34328391	0.86[ASN][1000 genomes]
rs34451919	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34556545	0.93[ASN][1000 genomes]
rs34561759	1.00[ASN][1000 genomes]
rs35009554	1.00[ASN][1000 genomes]
rs35033077	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35168922	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35302448	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35984502	0.86[ASN][1000 genomes]
rs4459477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4902250	1.00[ASN][1000 genomes]
rs66684280	1.00[ASN][1000 genomes]
rs67289344	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71416319	1.00[ASN][1000 genomes]
rs7144308	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7401191	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8008527	0.83[EUR][1000 genomes]
rs8015210	0.86[JPT][hapmap]
rs8023195	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1038825	chr14:64109441-64491720	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1037140	chr14:64248421-64442980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv542119	chr14:64248421-64442980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64321200-64340600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:64321400-64350200	Weak transcription	Fetal Stomach	stomach
3	chr14:64322800-64340400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr14:64322800-64340600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:64323200-64340200	Weak transcription	Left Ventricle	heart
6	chr14:64323200-64340400	Weak transcription	Spleen	Spleen
7	chr14:64324600-64341400	Weak transcription	HSMM	muscle
8	chr14:64327200-64340600	Weak transcription	Right Ventricle	heart
9	chr14:64327400-64355200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr14:64327600-64360000	Weak transcription	Gastric	stomach
11	chr14:64327800-64342200	Weak transcription	Esophagus	oesophagus
12	chr14:64330200-64343600	Weak transcription	Brain Germinal Matrix	brain
13	chr14:64330600-64338200	Enhancers	Primary B cells from peripheral blood	blood
14	chr14:64331200-64336600	Weak transcription	HMEC	breast
15	chr14:64331200-64356400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr14:64331400-64339800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr14:64331400-64340400	Weak transcription	Fetal Heart	heart
18	chr14:64331400-64340800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr14:64331400-64342200	Weak transcription	NHLF	lung
20	chr14:64331600-64335600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr14:64331600-64336400	Enhancers	Dnd41	blood
22	chr14:64331600-64336600	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr14:64331600-64336600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr14:64331600-64336600	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr14:64331600-64336600	Weak transcription	HUVEC	blood vessel
26	chr14:64331600-64336800	Weak transcription	Osteobl	bone
27	chr14:64331600-64340400	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr14:64331600-64340400	Weak transcription	Right Atrium	heart
29	chr14:64331600-64340800	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr14:64331600-64341000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr14:64331600-64341800	Weak transcription	NHDF-Ad	bronchial
32	chr14:64331800-64341400	Enhancers	Primary T cells fromperipheralblood	blood
33	chr14:64332200-64336400	Weak transcription	Hela-S3	cervix
34	chr14:64332200-64336600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr14:64332200-64336600	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr14:64332400-64338000	Enhancers	Primary B cells from cord blood	blood
37	chr14:64332600-64337200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr14:64333000-64341000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr14:64333200-64340400	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr14:64333200-64340400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr14:64333400-64340400	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr14:64333400-64340600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr14:64334000-64335600	Weak transcription	Primary T cells from cord blood	blood
44	chr14:64334200-64335800	Enhancers	Stomach Mucosa	stomach
45	chr14:64334400-64335600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr14:64334400-64336000	Enhancers	Fetal Intestine Large	intestine
47	chr14:64334400-64336000	Flanking Active TSS	GM12878-XiMat	blood
48	chr14:64334400-64337000	Enhancers	Fetal Intestine Small	intestine
49	chr14:64334400-64337000	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr14:64334400-64337200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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