Variant report

Variant	rs3883910
Chromosome Location	chr8:87515888-87515889
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10088389	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10088739	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10092164	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10093238	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10093379	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10095129	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10095498	0.82[JPT][hapmap]
rs10096168	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10096443	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10103691	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10956800	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10956853	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1142528	1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs11775728	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11781016	0.83[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs11782512	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11787318	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs12543856	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes]
rs12543887	0.84[AMR][1000 genomes]
rs12544731	0.96[CEU][hapmap]
rs12546331	0.99[ASN][1000 genomes]
rs13042	0.82[JPT][hapmap]
rs13249753	0.82[JPT][hapmap]
rs13251647	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17608598	0.81[AMR][1000 genomes]
rs17608967	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1946939	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1946940	0.83[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3213911	0.96[CEU][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34895735	0.84[AMR][1000 genomes]
rs3903247	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4285463	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4587306	0.82[JPT][hapmap]
rs4961190	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes]
rs4961193	0.82[JPT][hapmap]
rs4961194	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4961196	0.95[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs56102132	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56122533	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56268009	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56321721	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56365416	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56395805	0.82[AMR][1000 genomes]
rs62509421	0.80[AMR][1000 genomes]
rs62510798	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62510806	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62510845	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6415565	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6471273	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs6471280	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6471296	0.82[JPT][hapmap]
rs6471309	0.82[JPT][hapmap]
rs6471345	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6471349	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6471351	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6471352	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6471354	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6471360	0.82[JPT][hapmap]
rs6981299	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6988601	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6994005	1.00[CEU][hapmap];0.84[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6996052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs6999022	0.91[ASN][1000 genomes]
rs7003059	0.82[JPT][hapmap]
rs7006017	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7006629	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7015263	0.91[ASN][1000 genomes]
rs7015490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7017716	0.82[JPT][hapmap]
rs7017719	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7459811	0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs7459897	0.91[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs7460251	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7460286	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7460439	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7461624	0.96[CEU][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7463186	0.98[ASN][1000 genomes]
rs7465350	0.96[CEU][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7465511	0.82[JPT][hapmap]
rs7817738	0.99[ASN][1000 genomes]
rs7818213	0.97[ASN][1000 genomes]
rs7820697	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7822494	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7823154	0.83[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs7837569	0.82[JPT][hapmap]
rs9642913	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs9773093	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349873	chr8:87185763-87603726	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv933966	chr8:87454655-87591558	ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3883910	FAM82B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87474000-87517000	Weak transcription	Small Intestine	intestine
2	chr8:87482400-87517000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr8:87482800-87519600	Weak transcription	HUVEC	blood vessel
4	chr8:87488400-87519800	Weak transcription	Psoas Muscle	Psoas
5	chr8:87494200-87519800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr8:87497000-87516000	Weak transcription	Gastric	stomach
7	chr8:87497000-87516600	Weak transcription	Right Ventricle	heart
8	chr8:87498200-87517200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr8:87498400-87517400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr8:87498400-87519200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr8:87506000-87516000	Weak transcription	Hela-S3	cervix
12	chr8:87506600-87520000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr8:87508000-87516000	Weak transcription	Esophagus	oesophagus
14	chr8:87508000-87516000	Weak transcription	Lung	lung
15	chr8:87508000-87516000	Weak transcription	Ovary	ovary
16	chr8:87508000-87516600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr8:87508000-87516600	Weak transcription	NH-A	brain
18	chr8:87508000-87520200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:87508200-87516000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr8:87508200-87516000	Weak transcription	Colonic Mucosa	Colon
21	chr8:87508200-87517000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr8:87508200-87520000	Weak transcription	Stomach Mucosa	stomach
23	chr8:87508600-87516000	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr8:87508600-87516400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr8:87508600-87517400	Weak transcription	Fetal Heart	heart
26	chr8:87508800-87516200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr8:87508800-87516600	Weak transcription	NHDF-Ad	bronchial
28	chr8:87509000-87516000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr8:87509000-87516000	Weak transcription	K562	blood
30	chr8:87509000-87516200	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr8:87509200-87519200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr8:87509400-87516200	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr8:87509400-87516200	Weak transcription	HSMMtube	muscle
34	chr8:87509400-87519400	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr8:87509600-87516600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr8:87511000-87516400	Weak transcription	Colon Smooth Muscle	Colon
37	chr8:87511000-87520200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr8:87511200-87516200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr8:87511400-87516600	Weak transcription	Left Ventricle	heart
40	chr8:87511600-87516000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr8:87511800-87519200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr8:87512000-87519000	Strong transcription	Primary B cells from cord blood	blood
43	chr8:87512600-87516400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr8:87513000-87519000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr8:87513200-87517800	Strong transcription	Fetal Stomach	stomach
46	chr8:87513200-87519000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr8:87513200-87519000	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr8:87513400-87516000	Weak transcription	Spleen	Spleen
49	chr8:87513400-87520000	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr8:87513800-87516400	Weak transcription	Brain Angular Gyrus	brain

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