Variant report

Variant	rs7017716
Chromosome Location	chr8:87429001-87429002
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:87427807..87429419-chr8:87440053..87442565,2	MCF-7	breast:
2	chr8:87427033..87429917-chr8:87470786..87473472,2	MCF-7	breast:
3	chr8:87427506..87429121-chr8:87437907..87440675,2	MCF-7	breast:
4	chr8:87427165..87429419-chr8:87519742..87522067,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000123124	Chromatin interaction
ENSG00000176623	Chromatin interaction

Extended variants
information (count: 183 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:179)

rs_ID	r²[population]
rs10085920	0.95[CEU][hapmap];0.85[TSI][hapmap]
rs10086340	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10087788	1.00[ASW][hapmap];0.90[CEU][hapmap];0.87[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];0.96[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap]
rs10088739	0.82[JPT][hapmap]
rs10093238	0.82[JPT][hapmap]
rs10093729	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10095129	0.82[JPT][hapmap]
rs10095498	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.96[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10096168	0.82[JPT][hapmap]
rs10096443	0.82[CHD][hapmap];0.82[JPT][hapmap]
rs10097450	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10098356	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10102749	0.94[ASN][1000 genomes]
rs10103691	0.84[JPT][hapmap]
rs10112123	0.95[CEU][hapmap];0.86[TSI][hapmap]
rs1016102	0.90[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.94[YRI][hapmap]
rs10435563	0.95[CEU][hapmap];0.86[TSI][hapmap]
rs10481197	0.90[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.95[YRI][hapmap]
rs10956800	0.80[JPT][hapmap]
rs10956830	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10956853	0.82[JPT][hapmap]
rs10956873	0.90[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs1135451	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11539113	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11775728	0.82[JPT][hapmap]
rs11787318	0.82[JPT][hapmap]
rs11992656	0.90[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs12541793	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12543544	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12543856	0.82[JPT][hapmap]
rs12544463	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12546802	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12548328	0.88[CEU][hapmap];0.84[YRI][hapmap]
rs12549332	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12550142	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12678720	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12678772	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12679811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12681287	0.81[TSI][hapmap]
rs13042	0.83[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.83[ASN][1000 genomes]
rs13249177	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs13249753	1.00[ASW][hapmap];0.86[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.96[MEX][hapmap];0.98[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs13251006	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13251647	0.82[JPT][hapmap]
rs13252046	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13253261	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13253296	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13253515	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13254675	0.91[EUR][1000 genomes]
rs13256500	0.90[CEU][hapmap]
rs13256765	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13257414	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13258126	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13260345	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13261901	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13261956	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13262672	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13263353	0.86[CEU][hapmap];0.83[TSI][hapmap]
rs13264021	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs13264364	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13267782	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13267858	0.80[ASN][1000 genomes]
rs13269259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13272148	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13273338	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13279589	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13279850	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13280468	0.91[EUR][1000 genomes]
rs13281414	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13282351	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1436628	0.95[CEU][hapmap];0.85[TSI][hapmap];0.85[YRI][hapmap]
rs17608967	0.82[JPT][hapmap]
rs28378899	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28561640	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28645771	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2917557	0.95[CEU][hapmap];0.85[YRI][hapmap]
rs2953509	0.91[EUR][1000 genomes]
rs2953510	0.91[EUR][1000 genomes]
rs2953511	0.91[EUR][1000 genomes]
rs2953516	0.83[EUR][1000 genomes]
rs2953517	0.83[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2976178	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap];0.83[EUR][1000 genomes]
rs2976179	0.90[EUR][1000 genomes]
rs2976181	0.82[EUR][1000 genomes]
rs2976201	0.83[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs3213912	1.00[ASW][hapmap];0.90[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.80[TSI][hapmap];0.95[YRI][hapmap]
rs34219490	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs34227066	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34367154	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs34794500	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35418161	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs35471529	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs36081104	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs3779806	0.90[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs3779808	0.90[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs3883910	0.82[JPT][hapmap]
rs4129535	0.90[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes]
rs41469550	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4282548	0.95[CEU][hapmap];0.85[YRI][hapmap]
rs4285463	0.82[JPT][hapmap]
rs4310184	0.95[CEU][hapmap];0.85[TSI][hapmap]
rs4379426	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4379427	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4464946	0.83[EUR][1000 genomes]
rs4490816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4587306	0.91[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4623392	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4961188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4961190	0.82[JPT][hapmap]
rs4961193	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.95[YRI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4961194	0.82[JPT][hapmap]
rs4961195	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4961196	0.81[JPT][hapmap]
rs4961197	0.90[CEU][hapmap];0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs60982560	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs61106663	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6415565	0.82[JPT][hapmap]
rs6471273	0.82[JPT][hapmap]
rs6471280	0.82[JPT][hapmap]
rs6471296	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6471309	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6471314	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6471316	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6471352	0.82[JPT][hapmap]
rs6471354	0.85[JPT][hapmap]
rs6471360	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.98[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6651267	1.00[ASW][hapmap];0.90[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];0.96[MEX][hapmap];0.96[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap]
rs66808088	0.84[AFR][1000 genomes]
rs67123356	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs68008113	0.84[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6985066	1.00[ASW][hapmap];0.86[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.98[MKK][hapmap];0.90[TSI][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes]
rs6985427	0.95[CEU][hapmap]
rs6992287	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6992944	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6996052	0.82[JPT][hapmap]
rs6998303	0.81[AFR][1000 genomes]
rs7003059	0.83[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap]
rs7006017	0.82[JPT][hapmap]
rs7006629	0.82[JPT][hapmap]
rs7007055	0.84[AFR][1000 genomes]
rs7007855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7015490	0.82[JPT][hapmap]
rs7017706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7017719	0.82[JPT][hapmap]
rs71502657	0.81[EUR][1000 genomes]
rs72606633	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7459811	0.82[JPT][hapmap]
rs7459877	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7459897	0.81[JPT][hapmap]
rs7460286	0.82[JPT][hapmap]
rs7460342	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7460439	0.82[JPT][hapmap]
rs7460650	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7461366	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs7461413	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7461668	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7465511	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.98[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes]
rs7816275	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7820234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.90[EUR][1000 genomes]
rs7820697	0.81[JPT][hapmap]
rs7830480	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7832493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7833049	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7833786	0.81[TSI][hapmap]
rs7837569	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.96[MEX][hapmap];0.98[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7839601	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7841690	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7842042	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7846090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8635	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9283958	0.95[CEU][hapmap];0.85[TSI][hapmap];0.85[YRI][hapmap]
rs9297861	0.95[CEU][hapmap]
rs9297922	0.94[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.95[YRI][hapmap]
rs9297923	0.90[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs9642913	0.82[JPT][hapmap]
rs9657012	0.82[AMR][1000 genomes]
rs9942792	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9942793	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9942823	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv429926	chr8:87161695-87429872	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv3349873	chr8:87185763-87603726	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs7017716	FAM82B	cis	cerebellum	SCAN
rs7017716	RMDN1	cis	Whole Blood	GTEx
rs7017716	FAM82B	Cis_1M	lymphoblastoid	RTeQTL
rs7017716	FAM82B	cis	lesional skin	skin_eQTL
rs7017716	FAM82B	cis	parietal	SCAN
rs7017716	FAM82B	cis	Brain Pons	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87379600-87444000	Weak transcription	Brain Germinal Matrix	brain
2	chr8:87381000-87430800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr8:87382400-87444000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr8:87385000-87438000	Weak transcription	Fetal Brain Male	brain
5	chr8:87388400-87430600	Weak transcription	Fetal Kidney	kidney
6	chr8:87388600-87441200	Weak transcription	Right Ventricle	heart
7	chr8:87397400-87431200	Weak transcription	Fetal Brain Female	brain
8	chr8:87403000-87430600	Weak transcription	Esophagus	oesophagus
9	chr8:87404200-87440600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr8:87405400-87443600	Weak transcription	NHLF	lung
11	chr8:87405800-87429200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:87406000-87433000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr8:87406800-87437400	Weak transcription	HSMM	muscle
14	chr8:87409000-87435000	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr8:87409200-87440800	Weak transcription	Spleen	Spleen
16	chr8:87411400-87429600	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr8:87414400-87431400	Strong transcription	Rectal Mucosa Donor 31	rectum
18	chr8:87414800-87430600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr8:87415200-87437400	Weak transcription	NHDF-Ad	bronchial
20	chr8:87416400-87443600	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr8:87418200-87440800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr8:87419400-87430600	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr8:87419400-87437800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr8:87422200-87432800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr8:87422200-87440800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr8:87422200-87441200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr8:87423000-87432600	Strong transcription	Rectal Mucosa Donor 29	rectum
28	chr8:87423400-87431400	Strong transcription	Primary B cells from peripheral blood	blood
29	chr8:87424000-87429400	Enhancers	Stomach Mucosa	stomach
30	chr8:87424400-87430600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr8:87424600-87430600	Weak transcription	Primary hematopoietic stem cells	blood
32	chr8:87424800-87429800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr8:87425000-87430600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr8:87425200-87429400	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr8:87425200-87430800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr8:87425400-87430600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr8:87425600-87429200	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr8:87425600-87430400	Weak transcription	Osteobl	bone
39	chr8:87426000-87429200	Weak transcription	Lung	lung
40	chr8:87426000-87429800	Enhancers	Brain Hippocampus Middle	brain
41	chr8:87426000-87430000	Weak transcription	Fetal Muscle Leg	muscle
42	chr8:87426000-87430400	Weak transcription	Fetal Muscle Trunk	muscle
43	chr8:87426000-87446400	Weak transcription	K562	blood
44	chr8:87426200-87429200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr8:87426200-87429200	Weak transcription	Fetal Lung	lung
46	chr8:87426200-87429200	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr8:87426200-87430400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr8:87426400-87438400	Weak transcription	Colon Smooth Muscle	Colon
49	chr8:87426600-87429600	Enhancers	Brain Anterior Caudate	brain
50	chr8:87426600-87430000	Weak transcription	Duodenum Smooth Muscle	Duodenum

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