Variant report

Variant	rs3887252
Chromosome Location	chr7:18649934-18649935
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11977467	1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs17139344	0.83[AMR][1000 genomes]
rs17139451	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.91[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1726601	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1980368	1.00[CHB][hapmap]
rs2269748	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs3807901	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3814986	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3814989	1.00[JPT][hapmap]
rs3814992	1.00[JPT][hapmap]
rs3814993	1.00[JPT][hapmap]
rs58181058	0.95[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs59787068	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60500951	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs60871887	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs60934478	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73685122	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73685123	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830917	chr7:18612436-18817712	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18633800-18650000	Weak transcription	Aorta	Aorta
2	chr7:18641200-18670800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr7:18641400-18663400	Weak transcription	Brain Angular Gyrus	brain
4	chr7:18641400-18687600	Weak transcription	Fetal Heart	heart
5	chr7:18644800-18666600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:18644800-18678000	Weak transcription	Fetal Brain Male	brain
7	chr7:18645200-18652000	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr7:18645200-18653800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr7:18645200-18654000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr7:18645200-18659000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr7:18645200-18677800	Weak transcription	NHDF-Ad	bronchial
12	chr7:18645200-18678200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr7:18645200-18687200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr7:18645200-18708000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr7:18645400-18661600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr7:18645400-18662400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr7:18645400-18686600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr7:18645400-18687400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr7:18645400-18687800	Weak transcription	Brain Hippocampus Middle	brain
20	chr7:18645400-18721000	Weak transcription	Psoas Muscle	Psoas
21	chr7:18645600-18676800	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr7:18645800-18659000	Weak transcription	HSMMtube	muscle
23	chr7:18645800-18662800	Weak transcription	Brain Germinal Matrix	brain
24	chr7:18645800-18663200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr7:18645800-18663400	Weak transcription	Left Ventricle	heart
26	chr7:18645800-18684400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr7:18645800-18687400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr7:18645800-18687400	Weak transcription	Fetal Muscle Leg	muscle
29	chr7:18645800-18706000	Weak transcription	HMEC	breast
30	chr7:18646000-18658800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr7:18646000-18674000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr7:18646000-18678000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr7:18646000-18678000	Weak transcription	Fetal Brain Female	brain
34	chr7:18646000-18687400	Weak transcription	NHEK	skin
35	chr7:18646000-18692400	Strong transcription	Primary B cells from peripheral blood	blood
36	chr7:18647000-18657800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr7:18647000-18661400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr7:18647200-18665600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr7:18647200-18665800	Weak transcription	HSMM	muscle
40	chr7:18647200-18687800	Weak transcription	NH-A	brain
41	chr7:18648600-18650600	Strong transcription	Primary B cells from cord blood	blood
42	chr7:18649200-18675200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr7:18649200-18687400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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