Variant report

Variant	rs60871887
Chromosome Location	chr7:18640841-18640842
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11977467	0.86[AFR][1000 genomes]
rs17139344	0.83[AMR][1000 genomes]
rs17139451	0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1726601	0.93[ASN][1000 genomes]
rs2269748	0.88[AFR][1000 genomes]
rs3807901	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3814986	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3887252	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs58181058	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs59787068	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60500951	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs60934478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73685122	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73685123	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830917	chr7:18612436-18817712	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18614600-18644200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr7:18618400-18641000	Weak transcription	Psoas Muscle	Psoas
3	chr7:18621000-18641200	Weak transcription	Right Ventricle	heart
4	chr7:18621200-18646800	Weak transcription	HSMM	muscle
5	chr7:18621400-18641000	Weak transcription	Brain Anterior Caudate	brain
6	chr7:18621800-18643600	Weak transcription	Brain Germinal Matrix	brain
7	chr7:18622000-18641000	Weak transcription	Brain Substantia Nigra	brain
8	chr7:18633000-18645400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:18633800-18641000	Weak transcription	Fetal Muscle Leg	muscle
10	chr7:18633800-18647000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr7:18633800-18650000	Weak transcription	Aorta	Aorta
12	chr7:18637800-18641000	Weak transcription	NHDF-Ad	bronchial
13	chr7:18637800-18647200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr7:18638000-18641000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr7:18638000-18645200	Strong transcription	Skeletal Muscle Female	skeletal muscle
16	chr7:18638400-18641400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr7:18638400-18647000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr7:18638600-18641600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr7:18639000-18641400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr7:18639200-18641000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr7:18639200-18641400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
22	chr7:18639200-18642200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
23	chr7:18639200-18642800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
24	chr7:18639600-18641400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
25	chr7:18640000-18641200	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
26	chr7:18640000-18641600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
27	chr7:18640000-18642600	ZNF genes & repeats	Fetal Brain Female	brain
28	chr7:18640000-18642800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
29	chr7:18640000-18643000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr7:18640000-18645200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
31	chr7:18640000-18646000	ZNF genes & repeats	Primary B cells from cord blood	blood
32	chr7:18640200-18641200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
33	chr7:18640200-18641400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr7:18640200-18641400	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
35	chr7:18640200-18643200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr7:18640200-18646000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr7:18640200-18646000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
38	chr7:18640400-18641400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
39	chr7:18640400-18641400	ZNF genes & repeats	Brain Angular Gyrus	brain
40	chr7:18640400-18641400	ZNF genes & repeats	Fetal Heart	heart
41	chr7:18640400-18641600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
42	chr7:18640400-18641800	ZNF genes & repeats	NHEK	skin
43	chr7:18640400-18644000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr7:18640400-18645200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr7:18640600-18641000	Weak transcription	Spleen	Spleen
46	chr7:18640600-18641400	ZNF genes & repeats	Adipose Nuclei	Adipose
47	chr7:18640600-18641400	ZNF genes & repeats	Osteobl	bone
48	chr7:18640800-18641200	ZNF genes & repeats	Brain Hippocampus Middle	brain
49	chr7:18640800-18641200	ZNF genes & repeats	HMEC	breast
50	chr7:18640800-18641600	ZNF genes & repeats	HSMMtube	muscle

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