Variant report

Variant	rs3887426
Chromosome Location	chr16:79681813-79681814
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:79677551..79680455-chr16:79681797..79684734,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12598819	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12599420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16944214	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16950907	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16950919	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16950934	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16951124	1.00[AMR][1000 genomes]
rs73575101	1.00[AMR][1000 genomes]
rs751042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs878864	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv833295	chr16:79568878-79726768	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv906992	chr16:79649394-79769790	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79666400-79682200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr16:79674400-79686400	Weak transcription	Fetal Thymus	thymus
3	chr16:79675200-79685200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr16:79675400-79685200	Weak transcription	Fetal Muscle Leg	muscle
5	chr16:79676400-79687800	Weak transcription	Fetal Kidney	kidney
6	chr16:79678800-79683000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr16:79679000-79682800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr16:79679600-79682400	Weak transcription	HSMMtube	muscle
9	chr16:79679600-79685000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr16:79679800-79684800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr16:79680400-79682200	Enhancers	HMEC	breast
12	chr16:79681200-79685000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr16:79681200-79685000	Weak transcription	NH-A	brain
14	chr16:79681600-79682000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr16:79681600-79682000	Enhancers	Brain Cingulate Gyrus	brain
16	chr16:79681600-79682000	Enhancers	Brain Substantia Nigra	brain
17	chr16:79681600-79682200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr16:79681600-79683400	Enhancers	HSMM	muscle
19	chr16:79681600-79685000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr16:79681800-79682000	Bivalent Enhancer	Brain Hippocampus Middle	brain
21	chr16:79681800-79685000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr16:79681800-79685000	Weak transcription	NHEK	skin

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