Variant report

Variant	rs73575101
Chromosome Location	chr16:79752253-79752254
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12325149	0.93[ASN][1000 genomes]
rs12598819	1.00[AMR][1000 genomes]
rs12599420	1.00[AMR][1000 genomes]
rs16944214	1.00[AMR][1000 genomes]
rs16950907	1.00[AMR][1000 genomes]
rs16950919	1.00[AMR][1000 genomes]
rs16950934	1.00[AMR][1000 genomes]
rs16950971	0.87[EUR][1000 genomes]
rs16950996	0.87[EUR][1000 genomes]
rs16951099	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16951102	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16951117	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16951124	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16951131	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16951148	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3887426	1.00[AMR][1000 genomes]
rs58619341	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59304063	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59745782	1.00[ASN][1000 genomes]
rs60684877	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73575092	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73577112	1.00[ASN][1000 genomes]
rs74037503	0.87[EUR][1000 genomes]
rs74037511	0.87[EUR][1000 genomes]
rs74037512	0.87[EUR][1000 genomes]
rs74037535	0.87[EUR][1000 genomes]
rs751042	1.00[AMR][1000 genomes]
rs878864	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv906992	chr16:79649394-79769790	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv833296	chr16:79692236-79889727	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv833297	chr16:79732501-79920419	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79748000-79756200	Weak transcription	Gastric	stomach
2	chr16:79748200-79760400	Enhancers	Fetal Intestine Small	intestine
3	chr16:79748400-79752400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr16:79748400-79760800	Enhancers	Fetal Intestine Large	intestine
5	chr16:79749000-79754800	Weak transcription	Colon Smooth Muscle	Colon
6	chr16:79749800-79754000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr16:79749800-79754400	Weak transcription	Liver	Liver
8	chr16:79749800-79754800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr16:79749800-79756400	Weak transcription	Stomach Mucosa	stomach
10	chr16:79750200-79752400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr16:79750600-79752400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr16:79750800-79754600	Weak transcription	Ovary	ovary
13	chr16:79751000-79755200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr16:79751600-79755400	Weak transcription	Aorta	Aorta
15	chr16:79751600-79755800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr16:79752000-79755200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr16:79752000-79755600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr16:79752000-79755800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr16:79752000-79756000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr16:79752000-79757400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr16:79752200-79754200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr16:79752200-79754400	Weak transcription	Fetal Kidney	kidney
23	chr16:79752200-79754600	Weak transcription	Fetal Lung	lung
24	chr16:79752200-79755200	Weak transcription	Fetal Muscle Leg	muscle
25	chr16:79752200-79756400	Weak transcription	H9 Cell Line	embryonic stem cell

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