Variant report

Variant	rs3891650
Chromosome Location	chr14:64620971-64620972
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1571511	1.00[ASN][1000 genomes]
rs2983745	1.00[ASN][1000 genomes]
rs2987978	1.00[ASN][1000 genomes]
rs2987981	1.00[ASN][1000 genomes]
rs2987985	1.00[ASN][1000 genomes]
rs55857324	1.00[ASN][1000 genomes]
rs56123497	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64567400-64647200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr14:64578200-64649000	Strong transcription	Primary T helper cells fromperipheralblood	blood
3	chr14:64578600-64649000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:64581800-64650400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:64583400-64649000	Strong transcription	Rectal Mucosa Donor 29	rectum
6	chr14:64583600-64638000	Strong transcription	Placenta	Placenta
7	chr14:64584600-64623000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:64586000-64649000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr14:64586400-64631800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr14:64590200-64634000	Weak transcription	HepG2	liver
11	chr14:64591000-64649000	Strong transcription	Liver	Liver
12	chr14:64594600-64653200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr14:64596400-64653000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr14:64597000-64626400	Weak transcription	Psoas Muscle	Psoas
15	chr14:64600600-64667400	Weak transcription	Stomach Mucosa	stomach
16	chr14:64606200-64627200	Strong transcription	Rectal Mucosa Donor 31	rectum
17	chr14:64606200-64647200	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr14:64606600-64623000	Strong transcription	Thymus	Thymus
19	chr14:64608800-64623200	Strong transcription	Sigmoid Colon	Sigmoid Colon
20	chr14:64609800-64633200	Weak transcription	Small Intestine	intestine
21	chr14:64609800-64636600	Weak transcription	Primary B cells from peripheral blood	blood
22	chr14:64609800-64653000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr14:64610600-64622200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr14:64610600-64625400	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr14:64610600-64651000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr14:64612600-64640000	Strong transcription	Dnd41	blood
27	chr14:64612800-64640000	Strong transcription	Primary T cells from cord blood	blood
28	chr14:64613800-64635400	Weak transcription	Stomach Smooth Muscle	stomach
29	chr14:64614000-64626800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr14:64614000-64628800	Weak transcription	Right Ventricle	heart
31	chr14:64614000-64635600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr14:64614200-64625200	Weak transcription	Lung	lung
33	chr14:64614200-64628800	Weak transcription	Gastric	stomach
34	chr14:64614200-64635400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr14:64614200-64636000	Weak transcription	Hela-S3	cervix
36	chr14:64614200-64637000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr14:64614400-64623400	Strong transcription	Fetal Stomach	stomach
38	chr14:64614400-64624200	Weak transcription	HUVEC	blood vessel
39	chr14:64614400-64625400	Weak transcription	NHEK	skin
40	chr14:64614600-64626000	Weak transcription	Primary B cells from cord blood	blood
41	chr14:64614600-64631800	Weak transcription	NH-A	brain
42	chr14:64614800-64626200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr14:64614800-64644400	Weak transcription	HSMM	muscle
44	chr14:64616000-64628600	Weak transcription	Colonic Mucosa	Colon
45	chr14:64616200-64624600	Weak transcription	Brain Germinal Matrix	brain
46	chr14:64616600-64622000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr14:64617400-64627000	Strong transcription	Duodenum Mucosa	Duodenum
48	chr14:64617600-64649000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr14:64617800-64623200	Strong transcription	Fetal Intestine Large	intestine
50	chr14:64617800-64627200	Strong transcription	Skeletal Muscle Female	skeletal muscle

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