Variant report
| Variant | rs55857324 |
|---|---|
| Chromosome Location | chr14:64778219-64778220 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:64777920..64779456-chr14:64802169..64804568,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000214770 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs12878181 | 1.00[ASN][1000 genomes] |
| rs1571511 | 1.00[ASN][1000 genomes] |
| rs2983737 | 1.00[ASN][1000 genomes] |
| rs2983743 | 1.00[ASN][1000 genomes] |
| rs2983745 | 1.00[ASN][1000 genomes] |
| rs2987978 | 1.00[ASN][1000 genomes] |
| rs2987981 | 1.00[ASN][1000 genomes] |
| rs2987985 | 1.00[ASN][1000 genomes] |
| rs3020443 | 0.83[EUR][1000 genomes] |
| rs35262226 | 1.00[ASN][1000 genomes] |
| rs3891650 | 1.00[ASN][1000 genomes] |
| rs4899134 | 1.00[ASN][1000 genomes] |
| rs4902280 | 1.00[ASN][1000 genomes] |
| rs55739639 | 1.00[ASN][1000 genomes] |
| rs55795508 | 1.00[ASN][1000 genomes] |
| rs8003379 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv902019 | chr14:64395569-64882380 | Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 48 gene(s) | inside rSNPs | diseases |
| 2 | nsv1307 | chr14:64742037-64787315 | Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
