Variant report

Variant	rs3893997
Chromosome Location	chr15:45372600-45372601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10152927	1.00[EUR][1000 genomes]
rs10162724	1.00[EUR][1000 genomes]
rs10467911	1.00[EUR][1000 genomes]
rs10467978	1.00[EUR][1000 genomes]
rs11070446	1.00[EUR][1000 genomes]
rs11504668	1.00[EUR][1000 genomes]
rs12324044	1.00[EUR][1000 genomes]
rs13380419	1.00[EUR][1000 genomes]
rs16940825	1.00[EUR][1000 genomes]
rs16940836	1.00[EUR][1000 genomes]
rs16941118	1.00[EUR][1000 genomes]
rs16941127	1.00[EUR][1000 genomes]
rs16941245	1.00[EUR][1000 genomes]
rs16941355	1.00[EUR][1000 genomes]
rs16977579	1.00[EUR][1000 genomes]
rs17215605	1.00[EUR][1000 genomes]
rs2413770	1.00[EUR][1000 genomes]
rs2413779	1.00[EUR][1000 genomes]
rs2413781	1.00[EUR][1000 genomes]
rs2467831	1.00[EUR][1000 genomes]
rs28822532	1.00[EUR][1000 genomes]
rs28881324	1.00[EUR][1000 genomes]
rs55721356	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56166527	1.00[EUR][1000 genomes]
rs56970738	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57350749	1.00[EUR][1000 genomes]
rs58361817	1.00[EUR][1000 genomes]
rs60071040	1.00[EUR][1000 genomes]
rs60731128	1.00[EUR][1000 genomes]
rs61733393	1.00[EUR][1000 genomes]
rs6493133	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7163607	1.00[EUR][1000 genomes]
rs7171901	1.00[EUR][1000 genomes]
rs73406323	1.00[EUR][1000 genomes]
rs73406325	1.00[EUR][1000 genomes]
rs73413510	1.00[EUR][1000 genomes]
rs73413518	1.00[EUR][1000 genomes]
rs73413524	1.00[EUR][1000 genomes]
rs73413539	1.00[EUR][1000 genomes]
rs73413553	1.00[EUR][1000 genomes]
rs73413567	1.00[EUR][1000 genomes]
rs73413599	1.00[EUR][1000 genomes]
rs73415960	1.00[EUR][1000 genomes]
rs8023604	1.00[EUR][1000 genomes]
rs8037964	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8041776	1.00[EUR][1000 genomes]
rs9972443	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758380	chr15:44968868-45422842	Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
2	esv2760029	chr15:44968868-45422842	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
3	nsv916374	chr15:45058112-45769052	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
4	esv2757599	chr15:45100852-45383620	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv932147	chr15:45319178-45872076	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
6	nsv427961	chr15:45338381-45491634	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
7	nsv977711	chr15:45362652-45373399	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45345000-45374800	Weak transcription	Aorta	Aorta
2	chr15:45363800-45398400	Weak transcription	Gastric	stomach
3	chr15:45367800-45375400	Weak transcription	HepG2	liver
4	chr15:45369600-45374200	Enhancers	Fetal Heart	heart
5	chr15:45369600-45376800	Enhancers	K562	blood
6	chr15:45371200-45372600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr15:45371200-45374200	Enhancers	Stomach Mucosa	stomach
8	chr15:45371800-45372600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr15:45372000-45373600	Enhancers	Left Ventricle	heart
10	chr15:45372200-45373600	Enhancers	Pancreas	Pancrea
11	chr15:45372200-45373600	Enhancers	Right Atrium	heart
12	chr15:45372400-45372800	Weak transcription	Right Ventricle	heart

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