Variant report

Variant	rs73413510
Chromosome Location	chr15:45513758-45513759
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:45497672..45499450-chr15:45511651..45513794,2	MCF-7	breast:
2	chr15:45478493..45480559-chr15:45513673..45516315,2	MCF-7	breast:
3	chr15:45512789..45515700-chr15:45518992..45521212,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138606	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10152927	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10162724	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10467911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10467978	1.00[EUR][1000 genomes]
rs11070446	1.00[EUR][1000 genomes]
rs11504668	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12324044	1.00[EUR][1000 genomes]
rs13380419	1.00[EUR][1000 genomes]
rs16940825	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16940836	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16941118	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16941127	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16941245	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16941355	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16977579	1.00[EUR][1000 genomes]
rs17215605	1.00[EUR][1000 genomes]
rs2413770	1.00[EUR][1000 genomes]
rs2413779	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2413781	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2467831	1.00[EUR][1000 genomes]
rs28822532	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28881324	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3893997	1.00[EUR][1000 genomes]
rs56166527	1.00[EUR][1000 genomes]
rs56970738	1.00[EUR][1000 genomes]
rs57350749	1.00[EUR][1000 genomes]
rs58361817	1.00[EUR][1000 genomes]
rs60071040	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60731128	1.00[EUR][1000 genomes]
rs61733393	1.00[EUR][1000 genomes]
rs6493133	1.00[EUR][1000 genomes]
rs7163607	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7171901	1.00[EUR][1000 genomes]
rs7175964	0.80[AMR][1000 genomes]
rs73406323	1.00[EUR][1000 genomes]
rs73406325	1.00[EUR][1000 genomes]
rs73413518	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73413524	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73413539	1.00[EUR][1000 genomes]
rs73413553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73413567	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73413599	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73415944	0.91[AMR][1000 genomes]
rs73415960	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8023604	1.00[EUR][1000 genomes]
rs8037964	1.00[EUR][1000 genomes]
rs8041776	1.00[EUR][1000 genomes]
rs9972443	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916374	chr15:45058112-45769052	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv932147	chr15:45319178-45872076	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv869616	chr15:45401411-45736209	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv569315	chr15:45446156-45772448	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
5	nsv977712	chr15:45501081-45515127	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45510400-45516800	Weak transcription	Pancreas	Pancrea
2	chr15:45510800-45514200	Weak transcription	Fetal Intestine Large	intestine
3	chr15:45513600-45514000	Weak transcription	Stomach Mucosa	stomach

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