Variant report
| Variant | rs7175964 |
|---|---|
| Chromosome Location | chr15:45597234-45597235 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:45591791..45594102-chr15:45596892..45599329,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10162724 | 0.80[AMR][1000 genomes] |
| rs10467911 | 0.80[AMR][1000 genomes] |
| rs11504668 | 0.80[AMR][1000 genomes] |
| rs1628293 | 0.91[AMR][1000 genomes] |
| rs16940825 | 0.80[AMR][1000 genomes] |
| rs16940836 | 0.80[AMR][1000 genomes] |
| rs1706776 | 0.91[AMR][1000 genomes] |
| rs1706780 | 0.91[AMR][1000 genomes] |
| rs1706792 | 0.91[AMR][1000 genomes] |
| rs1706793 | 0.91[AMR][1000 genomes] |
| rs1719243 | 0.91[AMR][1000 genomes] |
| rs1719251 | 0.91[AMR][1000 genomes] |
| rs1719252 | 0.91[AMR][1000 genomes] |
| rs2413779 | 0.80[AMR][1000 genomes] |
| rs2413781 | 0.80[AMR][1000 genomes] |
| rs2668741 | 0.83[AMR][1000 genomes] |
| rs2687516 | 0.91[AMR][1000 genomes] |
| rs28822532 | 0.80[AMR][1000 genomes] |
| rs28881324 | 0.80[AMR][1000 genomes] |
| rs60071040 | 0.80[AMR][1000 genomes] |
| rs73413510 | 0.80[AMR][1000 genomes] |
| rs73413518 | 0.80[AMR][1000 genomes] |
| rs73413524 | 0.80[AMR][1000 genomes] |
| rs73413553 | 0.80[AMR][1000 genomes] |
| rs73413567 | 0.80[AMR][1000 genomes] |
| rs73413599 | 0.80[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916374 | chr15:45058112-45769052 | Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 104 gene(s) | inside rSNPs | diseases |
| 2 | nsv932147 | chr15:45319178-45872076 | Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 87 gene(s) | inside rSNPs | diseases |
| 3 | nsv869616 | chr15:45401411-45736209 | Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 76 gene(s) | inside rSNPs | diseases |
| 4 | nsv569315 | chr15:45446156-45772448 | Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 75 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:45597200-45601800 | Enhancers | Cortex derived primary cultured neurospheres | brain |
