Variant report

Variant	rs3896609
Chromosome Location	chr15:51057868-51057869
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:397)
CpG islands
(count:61)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:397 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:51057143-51058131	SK-N-MC	brain:	n/a	n/a
2	POLR2A	chr15:51057429-51058243	H1-neurons	neurons:	n/a	n/a
3	POLR2A	chr15:51057314-51058321	Gliobla	brain:	n/a	n/a
4	NRF1	chr15:51057455-51058088	GM12878	blood:	n/a	n/a
5	TAF1	chr15:51057746-51058084	GM12891	blood:	n/a	n/a
6	MAX	chr15:51057487-51058351	A549	lung:	n/a	n/a
7	POLR2A	chr15:51057112-51058590	Hela-S3	cervix:	n/a	n/a
8	TAF1	chr15:51057105-51058229	A549	lung:	n/a	n/a
9	TAF1	chr15:51057133-51058176	K562	blood:	n/a	n/a
10	POLR2A	chr15:51057266-51058507	GM19193	blood:	n/a	n/a
11	POLR2A	chr15:51057291-51058201	A549	lung:	n/a	n/a
12	CHD1	chr15:51056442-51058202	GM12878	blood:	n/a	n/a
13	MAX	chr15:51057255-51058239	K562	blood:	n/a	n/a
14	RELA	chr15:51056535-51058305	GM12878	blood:	n/a	chr15:51057932-51057941 chr15:51057932-51057941
15	POLR2A	chr15:51056647-51058461	GM12878	blood:	n/a	n/a
16	ELF1	chr15:51056417-51058579	MCF-7	breast:	n/a	chr15:51057901-51057912 chr15:51057612-51057624 chr15:51057882-51057894
17	GABPA	chr15:51057327-51058285	HL-60	blood:	n/a	n/a
18	POLR2A	chr15:51057170-51058791	HepG2	liver:	n/a	n/a
19	MAFK	chr15:51057832-51058352	Hela-S3	cervix:	n/a	n/a
20	GTF2F1	chr15:51057760-51057897	H1-hESC	embryonic stem cell:	n/a	n/a
21	GABPA	chr15:51057467-51058059	HepG2	liver:	n/a	n/a
22	USF2	chr15:51057834-51058075	H1-hESC	embryonic stem cell:	n/a	n/a
23	POLR2A	chr15:51057126-51058381	IMR90	lung:	n/a	n/a
24	TCF12	chr15:51057826-51058006	GM12878	blood:	n/a	n/a
25	RUNX3	chr15:51057074-51058397	GM12878	blood:	n/a	n/a
26	ETS1	chr15:51057577-51058098	K562	blood:	n/a	chr15:51057908-51057917 chr15:51057904-51057915 chr15:51058038-51058047 chr15:51057901-51057908
27	CTCF	chr15:51057483-51057987	K562	blood:	n/a	n/a
28	ELF1	chr15:51057376-51058151	K562	blood:	n/a	chr15:51057901-51057912 chr15:51057612-51057624 chr15:51057882-51057894
29	HDAC2	chr15:51057057-51058393	MCF-7	breast:	n/a	chr15:51057256-51057270 chr15:51057258-51057272 chr15:51057261-51057275 chr15:51057260-51057274
30	YY1	chr15:51057368-51058207	GM12892	blood:	n/a	chr15:51057621-51057632
31	MYC	chr15:51057666-51058019	MCF-7	breast:	n/a	n/a
32	MAX	chr15:51057254-51058184	GM12878	blood:	n/a	n/a
33	TAF1	chr15:51057433-51058154	HepG2	liver:	n/a	n/a
34	HEY1	chr15:51057109-51058364	K562	blood:	n/a	chr15:51057799-51057814
35	POLR2A	chr15:51057208-51058143	HepG2	liver:	n/a	n/a
36	EP300	chr15:51056616-51058369	GM12878	blood:	n/a	chr15:51056848-51056862 chr15:51057901-51057910 chr15:51057619-51057635 chr15:51057810-51057826
37	ZNF143	chr15:51057497-51058237	H1-hESC	embryonic stem cell:	n/a	chr15:51057939-51057949
38	MAX	chr15:51057221-51058318	NB4	blood:	n/a	n/a
39	NFIC	chr15:51057048-51058216	GM12878	blood:	n/a	n/a
40	SIN3AK20	chr15:51057202-51058168	SK-N-SH	brain:	n/a	n/a
41	POLR2A	chr15:51057429-51058352	GM12878	blood:	n/a	n/a
42	PBX3	chr15:51057401-51058397	SK-N-SH	brain:	n/a	chr15:51057787-51057807
43	MAX	chr15:51057364-51058235	ECC-1	luminal epithelium:	n/a	n/a
44	POLR2A	chr15:51057358-51058207	H1-hESC	embryonic stem cell:	n/a	n/a
45	TBP	chr15:51056424-51058348	GM12878	blood:	n/a	n/a
46	ETS1	chr15:51057181-51058152	A549	lung:	n/a	chr15:51057908-51057917 chr15:51057904-51057915 chr15:51058038-51058047 chr15:51057901-51057908
47	POU2F2	chr15:51057515-51058128	GM12891	blood:	n/a	chr15:51057885-51057897
48	ETS1	chr15:51057529-51058119	GM12878	blood:	n/a	chr15:51057908-51057917 chr15:51057904-51057915 chr15:51058038-51058047 chr15:51057901-51057908
49	POLR2A	chr15:51057041-51058293	HUVEC	blood vessel:	n/a	n/a
50	TAF7	chr15:51057294-51057975	H1-hESC	embryonic stem cell:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:51057859-51057909	HIPEpiC	eye:	n/a
2	chr15:51057859-51057909	ProgFib	skin:	n/a
3	chr15:51057859-51057909	U87	brain:	n/a
4	chr15:51057859-51057909	PANC-1	pancreas:	n/a
5	chr15:51057859-51057909	RPTEC	kidney:	n/a
6	chr15:51057859-51057909	T-47D	breast:	n/a
7	chr15:51057859-51057909	HAEpiC	amniotic membrane:	n/a
8	chr15:51057859-51057909	CMK	blood:	n/a
9	chr15:51057859-51057909	Hela-S3	cervix:	n/a
10	chr15:51057859-51057909	NB4	blood:	n/a
11	chr15:51057859-51057909	AG04449	skin:	fetal
12	chr15:51057859-51057909	GM12878	blood:	n/a
13	chr15:51057859-51057909	SK-N-MC	brain:	n/a
14	chr15:51057859-51057909	HRE	kidney:	n/a
15	chr15:51057859-51057909	NH-A	brain:	n/a
16	chr15:51057859-51057909	SK-N-SH_RA	brain:	n/a
17	chr15:51057859-51057909	NHDF-neo	bronchial:	n/a
18	chr15:51057859-51057909	ECC-1	luminal epithelium:	n/a
19	chr15:51057859-51057909	HUVEC	blood vessel:	n/a
20	chr15:51057859-51057909	HRCEpiC	kidney:	n/a
21	chr15:51057859-51057909	HCM	heart:	n/a
22	chr15:51057859-51057909	GM12891	blood:	n/a
23	chr15:51057859-51057909	AG09309	skin:	n/a
24	chr15:51057859-51057909	IMR90	lung:	fetal
25	chr15:51057859-51057909	HMEC	breast:	n/a
26	chr15:51057859-51057909	PrEC	prostate:	n/a
27	chr15:51057859-51057909	SK-N-SH	brain:	n/a
28	chr15:51057859-51057909	HEK293	kidney:	embryo
29	chr15:51057859-51057909	H1-hESC	embryonic stem cell:	embryo
30	chr15:51057859-51057909	Hepatocyte	liver:	n/a
31	chr15:51057859-51057909	BE2_C	brain:	n/a
32	chr15:51057859-51057909	HCF	heart:	n/a
33	chr15:51057859-51057909	K562	blood:	n/a
34	chr15:51057859-51057909	BJ	skin:	n/a
35	chr15:51057859-51057909	PFSK-1	brain:	n/a
36	chr15:51057859-51057909	SAEC	small airway:	n/a
37	chr15:51057859-51057909	SKMC	muscle:	n/a
38	chr15:51057859-51057909	LNCaP	prostate:	n/a
39	chr15:51057859-51057909	GM06990	blood:	n/a
40	chr15:51057859-51057909	HNPCEpiC	eye:	n/a
41	chr15:51057859-51057909	AG09319	gingival:	n/a
42	chr15:51057859-51057909	AoSMC	blood vessel:	n/a
43	chr15:51057859-51057909	NT2-D1	testis:	n/a
44	chr15:51057859-51057909	AG04450	lung:	fetal
45	chr15:51057859-51057909	HL-60	blood:	n/a
46	chr15:51057859-51057909	Jurkat	blood:	n/a
47	chr15:51057859-51057909	ovcar-3	ovarian:	n/a
48	chr15:51057859-51057909	NHBE	bronchial:	n/a
49	chr15:51057859-51057909	Caco-2	colon:	n/a
50	chr15:51057859-51057909	AG10803	skin:	n/a

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:51057644..51058522-chr18:61089470..61090340,2	NB4	blood:
2	chr15:51056442..51059084-chr15:51199726..51202707,2	MCF-7	breast:
3	chr15:51056859..51057885-chr15:51146594..51147514,6	MCF-7	breast:
4	chr15:51057767..51058453-chr5:32174404..32175249,2	Hela-S3	cervix:
5	chr15:51056750..51061263-chr15:51087602..51092500,6	MCF-7	breast:
6	chr15:50976295..50981465-chr15:51052766..51059546,15	MCF-7	breast:
7	chr11:60926802..60929238-chr15:51056528..51059041,2	MCF-7	breast:
8	chr15:51057662..51059502-chr5:36875365..36877060,2	MCF-7	breast:
9	chr11:62608308..62609295-chr15:51057415..51058362,2	MCF-7	breast:
10	chr15:51039545..51042117-chr15:51054834..51058033,5	MCF-7	breast:
11	chr15:51057672..51058173-chr7:100026481..100027278,2	NB4	blood:
12	chr1:37940054..37940679-chr15:51057582..51058263,2	Hela-S3	cervix:
13	chr15:51057477..51058067-chr2:70313021..70313598,2	NB4	blood:
14	chr15:51057335..51059727-chr6:26020365..26022635,2	MCF-7	breast:
15	chr15:50977709..50979057-chr15:51056941..51058049,3	MCF-7	breast:
16	chr1:144533848..144534656-chr15:51057553..51058077,2	Hela-S3	cervix:
17	chr15:50977419..50980911-chr15:51055926..51058477,4	K562	blood:
18	chr10:104155402..104156225-chr15:51057321..51058119,2	Hela-S3	cervix:
19	chr15:51056515..51059362-chr15:51088829..51092887,6	MCF-7	breast:
20	chr15:50977319..50980700-chr15:51053372..51060901,7	MCF-7	breast:

No data

Variant related genes	Relation type
SPPL2A	TF binding region
SPPL2A	CpG island
ENSG00000092439	Chromatin interaction
ENSG00000078487	Chromatin interaction
ENSG00000179818	Chromatin interaction
ENSG00000113384	Chromatin interaction
ENSG00000077150	Chromatin interaction
ENSG00000081014	Chromatin interaction
ENSG00000198366	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000146834	Chromatin interaction
ENSG00000243027	Chromatin interaction
ENSG00000241130	Chromatin interaction
ENSG00000164190	Chromatin interaction
ENSG00000119541	Chromatin interaction
ENSG00000272086	Chromatin interaction
ENSG00000196176	Chromatin interaction
ENSG00000138600	Chromatin interaction
ENSG00000163874	Chromatin interaction
ENSG00000167987	Chromatin interaction
ENSG00000201699	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10400826	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12437770	0.85[EUR][1000 genomes]
rs12437783	0.85[EUR][1000 genomes]
rs12437803	0.85[EUR][1000 genomes]
rs12440570	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12440864	0.86[EUR][1000 genomes]
rs12442145	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12442197	0.83[EUR][1000 genomes]
rs12443283	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12592778	0.85[EUR][1000 genomes]
rs12595082	0.82[EUR][1000 genomes]
rs12595393	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17645935	0.83[EUR][1000 genomes]
rs17646025	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28470808	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28831840	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55757828	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55840738	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59685680	0.86[EUR][1000 genomes]
rs60155540	0.86[EUR][1000 genomes]
rs60695341	0.87[EUR][1000 genomes]
rs7170939	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72740493	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053966	chr15:50715572-51133186	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
2	nsv542383	chr15:50715572-51133186	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv1043805	chr15:50715572-51208891	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv542384	chr15:50715572-51208891	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
5	nsv1047443	chr15:50744781-51647023	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
6	nsv1051990	chr15:50745814-51133186	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv457134	chr15:50770868-51184583	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
8	nsv471242	chr15:50770868-51184583	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
9	nsv569396	chr15:50770868-51184583	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
10	nsv457135	chr15:50770868-51189707	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
11	nsv569397	chr15:50770868-51189707	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
12	nsv1048621	chr15:50775451-51115535	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
13	nsv1047039	chr15:50782070-51187804	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
14	nsv542385	chr15:50782070-51187804	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
15	nsv457136	chr15:50789125-51294995	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
16	nsv569398	chr15:50789125-51294995	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
17	nsv1036081	chr15:50818569-51097229	Strong transcription Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
18	nsv1055112	chr15:50822035-51133186	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
19	nsv1042372	chr15:50846461-51208891	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
20	nsv542386	chr15:50846461-51208891	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
21	nsv569399	chr15:50874964-51562198	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
22	nsv569400	chr15:50874964-51767265	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
23	nsv904212	chr15:50979738-51132170	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
24	nsv904213	chr15:51011402-51119731	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
25	nsv1044320	chr15:51016364-51074061	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
26	nsv457137	chr15:51019117-51117524	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
27	nsv569402	chr15:51019117-51117524	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
28	nsv529339	chr15:51048579-51270372	Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3896609	SPPL2A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51054800-51058000	Active TSS	Skeletal Muscle Male	skeletal muscle
2	chr15:51054800-51058200	Active TSS	Skeletal Muscle Female	skeletal muscle
3	chr15:51055400-51058200	Active TSS	Right Ventricle	heart
4	chr15:51055600-51058000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
5	chr15:51055800-51058000	Active TSS	K562	blood
6	chr15:51055800-51058200	Active TSS	GM12878-XiMat	blood
7	chr15:51056000-51058000	Active TSS	NHLF	lung
8	chr15:51056000-51058200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:51056000-51058200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr15:51056000-51058200	Active TSS	HSMM	muscle
11	chr15:51056000-51058200	Active TSS	HSMMtube	muscle
12	chr15:51056000-51058600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr15:51056000-51058600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr15:51056200-51058000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr15:51056200-51058000	Active TSS	Muscle Satellite Cultured Cells	--
16	chr15:51056200-51058000	Active TSS	Stomach Smooth Muscle	stomach
17	chr15:51056200-51058200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr15:51056200-51058200	Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr15:51056200-51058200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr15:51056200-51058200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr15:51056200-51058200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr15:51056200-51058200	Active TSS	NH-A	brain
23	chr15:51056200-51058400	Active TSS	ES-I3 Cell Line	embryonic stem cell
24	chr15:51056200-51058400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr15:51056200-51058400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr15:51056200-51058400	Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr15:51056200-51058600	Active TSS	Psoas Muscle	Psoas
28	chr15:51056400-51058000	Active TSS	Breast Myoepithelial Primary Cells	Breast
29	chr15:51056400-51058000	Active TSS	Primary T cells fromperipheralblood	blood
30	chr15:51056400-51058000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
31	chr15:51056400-51058000	Active TSS	HepG2	liver
32	chr15:51056400-51058000	Active TSS	HMEC	breast
33	chr15:51056400-51058000	Active TSS	NHEK	skin
34	chr15:51056400-51058200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
35	chr15:51056400-51058200	Active TSS	H1 Cell Line	embryonic stem cell
36	chr15:51056400-51058200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr15:51056400-51058200	Active TSS	Primary T helper cells PMA-I stimulated	--
38	chr15:51056400-51058200	Active TSS	Brain Germinal Matrix	brain
39	chr15:51056400-51058200	Active TSS	Colonic Mucosa	Colon
40	chr15:51056400-51058200	Active TSS	Fetal Brain Male	brain
41	chr15:51056400-51058200	Active TSS	Fetal Muscle Leg	muscle
42	chr15:51056400-51058200	Active TSS	Fetal Thymus	thymus
43	chr15:51056400-51058200	Active TSS	Thymus	Thymus
44	chr15:51056400-51058200	Active TSS	Hela-S3	cervix
45	chr15:51056400-51058400	Active TSS	NHDF-Ad	bronchial
46	chr15:51056400-51058600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr15:51056400-51058600	Active TSS	Fetal Brain Female	brain
48	chr15:51056600-51058000	Active TSS	Cortex derived primary cultured neurospheres	brain
49	chr15:51056600-51058000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr15:51056600-51058000	Active TSS	Fetal Adrenal Gland	Adrenal Gland

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