Variant report

Variant	rs3900180
Chromosome Location	chr11:17712679-17712680
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs3858491	0.84[ASN][1000 genomes]
rs3858492	0.84[ASN][1000 genomes]
rs3900179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756908	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6416179	0.89[AMR][1000 genomes]
rs6486389	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6486391	0.89[AMR][1000 genomes]
rs7951471	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040065	chr11:17556031-17753467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1044126	chr11:17557715-17730646	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv540953	chr11:17557715-17730646	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17710200-17713200	Weak transcription	Psoas Muscle	Psoas
2	chr11:17710800-17713200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr11:17710800-17713400	Weak transcription	HSMMtube	muscle
4	chr11:17711200-17714400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr11:17711600-17712800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr11:17711600-17713200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:17712200-17712800	Weak transcription	Fetal Muscle Leg	muscle
8	chr11:17712600-17714000	Enhancers	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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