Variant report

Variant	rs4756908
Chromosome Location	chr11:17719179-17719180
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10832853	0.81[AMR][1000 genomes]
rs11823125	1.00[MEX][hapmap]
rs2336850	1.00[ASN][1000 genomes]
rs3900179	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3900180	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4756913	1.00[ASN][1000 genomes]
rs4757571	1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757572	1.00[ASN][1000 genomes]
rs4757573	1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4757582	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4757583	1.00[ASN][1000 genomes]
rs4757584	1.00[MEX][hapmap]
rs4757585	0.89[AMR][1000 genomes]
rs6416179	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6486389	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs6486391	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7479607	0.89[AMR][1000 genomes]
rs7481438	0.89[AMR][1000 genomes]
rs7936354	1.00[MEX][hapmap]
rs7951471	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040065	chr11:17556031-17753467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1044126	chr11:17557715-17730646	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv540953	chr11:17557715-17730646	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv467717	chr11:17713507-17791822	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv553588	chr11:17713507-17791822	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17713200-17721800	Enhancers	Psoas Muscle	Psoas
2	chr11:17715200-17722000	Enhancers	HSMM	muscle
3	chr11:17717600-17720000	Weak transcription	Right Atrium	heart
4	chr11:17717600-17721800	Enhancers	HSMMtube	muscle
5	chr11:17717800-17719200	Weak transcription	Pancreas	Pancrea
6	chr11:17718800-17719200	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr11:17718800-17720600	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr11:17719000-17720800	Enhancers	Fetal Muscle Trunk	muscle
9	chr11:17719000-17724400	Enhancers	Fetal Muscle Leg	muscle

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