Variant report
| Variant | rs7936354 |
|---|---|
| Chromosome Location | chr11:17615655-17615656 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:17612630..17615852-chr11:17618211..17621966,5 | K562 | blood: | |
| 2 | chr11:17614764..17616023-chr11:17751704..17752684,3 | MCF-7 | breast: | |
| 3 | chr11:17614076..17616630-chr11:18008858..18011445,2 | K562 | blood: | |
| 4 | chr11:17605717..17608224-chr11:17613045..17615760,2 | K562 | blood: | |
| 5 | chr11:17613851..17615852-chr11:17618266..17620129,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000129158 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs10488684 | 1.00[ASW][hapmap];0.92[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes] |
| rs11822887 | 1.00[YRI][hapmap];0.86[AFR][1000 genomes] |
| rs11823125 | 0.82[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16914878 | 1.00[MEX][hapmap] |
| rs16934477 | 0.81[YRI][hapmap] |
| rs4543971 | 1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4756908 | 1.00[MEX][hapmap] |
| rs4757571 | 1.00[MEX][hapmap] |
| rs4757573 | 1.00[MEX][hapmap] |
| rs4757584 | 1.00[MEX][hapmap] |
| rs58345769 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7111475 | 1.00[MEX][hapmap] |
| rs7936324 | 0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1040065 | chr11:17556031-17753467 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv1044126 | chr11:17557715-17730646 | Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv540953 | chr11:17557715-17730646 | Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 4 | nsv469938 | chr11:17615203-17656148 | Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv467715 | chr11:17615655-17656148 | Enhancers Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 6 | nsv553587 | chr11:17615655-17656148 | Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
