Variant report

Variant	rs10488684
Chromosome Location	chr11:17612888-17612889
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17612630..17615852-chr11:17618211..17621966,5	K562	blood:
2	chr11:17611206..17613431-chr11:17997652..17999714,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10766411	0.86[ASN][1000 genomes]
rs10766412	0.84[ASN][1000 genomes]
rs10832808	0.87[ASN][1000 genomes]
rs10832809	0.84[CHB][hapmap];0.86[ASN][1000 genomes]
rs10832811	0.86[CHB][hapmap];0.86[ASN][1000 genomes]
rs10832812	0.86[CHB][hapmap];0.86[ASN][1000 genomes]
rs10832813	0.86[ASN][1000 genomes]
rs10832814	0.86[CHB][hapmap];1.00[CHD][hapmap];0.86[ASN][1000 genomes]
rs10832815	0.88[ASN][1000 genomes]
rs11024329	0.86[CHB][hapmap];0.88[ASN][1000 genomes]
rs11822887	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11823125	0.82[ASW][hapmap];0.92[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs16934433	0.85[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs16934461	1.00[GIH][hapmap];0.87[ASN][1000 genomes]
rs16934477	0.81[YRI][hapmap]
rs4543971	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs56136656	0.86[ASN][1000 genomes]
rs58345769	0.93[AFR][1000 genomes]
rs61268218	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7106021	0.86[CHB][hapmap];1.00[CHD][hapmap];0.88[ASN][1000 genomes]
rs7107242	0.85[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7924620	0.86[CHB][hapmap];1.00[CHD][hapmap];0.86[ASN][1000 genomes]
rs7936324	0.92[YRI][hapmap];0.95[AFR][1000 genomes]
rs7936354	1.00[ASW][hapmap];0.92[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs7936984	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7940163	0.86[ASN][1000 genomes]
rs7949484	0.85[CHB][hapmap];0.92[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040065	chr11:17556031-17753467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1044126	chr11:17557715-17730646	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv540953	chr11:17557715-17730646	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17612800-17613000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr11:17612800-17613200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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