Variant report

Variant	rs7106021
Chromosome Location	chr11:17608675-17608676
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10488684	0.86[CHB][hapmap];1.00[CHD][hapmap];0.88[ASN][1000 genomes]
rs10766411	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10766412	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10832807	0.83[CEU][hapmap];0.83[TSI][hapmap];0.85[EUR][1000 genomes]
rs10832808	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10832809	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10832810	0.85[EUR][1000 genomes]
rs10832811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10832812	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10832813	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10832814	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10832815	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024329	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024330	0.83[CEU][hapmap];0.83[TSI][hapmap];0.85[EUR][1000 genomes]
rs11822887	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs16934433	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs2108334	0.84[JPT][hapmap]
rs56136656	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61268218	0.87[ASN][1000 genomes]
rs7107242	0.92[CHD][hapmap]
rs7924620	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7936984	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs7940163	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7949484	0.92[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040065	chr11:17556031-17753467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1044126	chr11:17557715-17730646	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv540953	chr11:17557715-17730646	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7106021	NUCB2	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17600200-17610000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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