Variant report

Variant	rs4757582
Chromosome Location	chr11:17735661-17735662
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2336850	1.00[ASN][1000 genomes]
rs4756908	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4756913	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757571	1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757572	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757573	1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757583	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757584	0.91[AFR][1000 genomes]
rs4757585	0.83[EUR][1000 genomes]
rs6416179	0.82[EUR][1000 genomes]
rs6486391	1.00[ASN][1000 genomes]
rs7951471	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040065	chr11:17556031-17753467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv467717	chr11:17713507-17791822	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv553588	chr11:17713507-17791822	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv825772	chr11:17723530-17783128	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1037585	chr11:17730586-17768346	Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17729800-17736000	Weak transcription	Right Atrium	heart
2	chr11:17732000-17735800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:17732000-17736200	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr11:17732000-17736200	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr11:17735400-17736800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr11:17735600-17735800	Enhancers	Psoas Muscle	Psoas
7	chr11:17735600-17736200	Enhancers	HSMMtube	muscle
8	chr11:17735600-17736800	Bivalent Enhancer	Fetal Muscle Leg	muscle
9	chr11:17735600-17736800	Enhancers	HSMM	muscle
10	chr11:17735600-17737000	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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