Variant report

Variant	rs3906942
Chromosome Location	chr3:85887450-85887451
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10084716	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11711972	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11715949	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12494511	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12714642	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13068185	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13085195	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1448607	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1839171	0.81[EUR][1000 genomes]
rs2325037	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2875529	0.85[ASN][1000 genomes]
rs4129497	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4302393	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4302394	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4308293	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4364177	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4488844	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4504176	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4856606	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4856607	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56282418	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6549054	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6549055	0.85[ASN][1000 genomes]
rs6549063	0.82[AMR][1000 genomes]
rs6769012	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6787901	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6796380	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6796402	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7426412	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7429346	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7609709	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7612371	0.82[EUR][1000 genomes]
rs7620544	0.81[EUR][1000 genomes]
rs7626873	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7632162	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7636206	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7638774	0.82[EUR][1000 genomes]
rs7642281	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7648895	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9309996	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9681744	0.81[EUR][1000 genomes]
rs9713674	0.80[EUR][1000 genomes]
rs9829446	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9832847	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9836755	0.89[ASN][1000 genomes]
rs9846878	0.82[AMR][1000 genomes]
rs9850482	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9851502	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9881886	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877106	chr3:85814620-86006210	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv877107	chr3:85814620-86037162	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv877108	chr3:85870363-86037162	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85887400-85888200	Enhancers	Brain Angular Gyrus	brain
2	chr3:85887400-85889800	Enhancers	Brain Germinal Matrix	brain

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