Variant report
| Variant | rs4504176 |
|---|---|
| Chromosome Location | chr3:85847032-85847033 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10084716 | 0.82[AMR][1000 genomes] |
| rs11711972 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12494511 | 0.80[AMR][1000 genomes] |
| rs13068185 | 0.80[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs1448607 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1839171 | 0.91[EUR][1000 genomes] |
| rs2325037 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2875529 | 0.96[ASN][1000 genomes] |
| rs3906942 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4129497 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs4302393 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs4308293 | 0.82[AMR][1000 genomes] |
| rs6549054 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6549055 | 0.96[ASN][1000 genomes] |
| rs6796380 | 0.80[AMR][1000 genomes] |
| rs6796402 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs7429346 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7612371 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7632162 | 0.81[AMR][1000 genomes] |
| rs7638774 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9681744 | 0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9832847 | 0.82[AMR][1000 genomes] |
| rs9836755 | 1.00[ASN][1000 genomes] |
| rs9876664 | 0.87[ASN][1000 genomes] |
| rs9881886 | 0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1010541 | chr3:85505839-85870597 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv536625 | chr3:85505839-85870597 | Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv532629 | chr3:85763873-86608579 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 4 | nsv877106 | chr3:85814620-86006210 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv877107 | chr3:85814620-86037162 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:85846400-85848000 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
