Variant report

Variant	rs3909596
Chromosome Location	chr4:141879808-141879809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10519572	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17006671	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61425208	0.87[AMR][1000 genomes]
rs7661013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830090	chr4:141770494-141947764	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830091	chr4:141796603-141980546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv880168	chr4:141826780-141900370	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141862200-141891000	Weak transcription	Psoas Muscle	Psoas
2	chr4:141863800-141880600	Weak transcription	Left Ventricle	heart
3	chr4:141868800-141887400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:141869000-141889000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:141876800-141905600	Weak transcription	Fetal Kidney	kidney
6	chr4:141877000-141890600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr4:141877000-141892600	Weak transcription	Adipose Nuclei	Adipose
8	chr4:141877400-141890200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr4:141877600-141880200	Weak transcription	Fetal Heart	heart
10	chr4:141877600-141880600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:141877600-141880800	Weak transcription	Aorta	Aorta
12	chr4:141877600-141890200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr4:141877600-141905800	Weak transcription	Fetal Lung	lung
14	chr4:141877800-141886400	Weak transcription	Colon Smooth Muscle	Colon
15	chr4:141877800-141913600	Weak transcription	Right Ventricle	heart
16	chr4:141879400-141880000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr4:141879400-141880200	Strong transcription	Stomach Smooth Muscle	stomach
18	chr4:141879400-141880600	Enhancers	Fetal Thymus	thymus
19	chr4:141879400-141881000	Strong transcription	Fetal Stomach	stomach
20	chr4:141879400-141881000	Strong transcription	Ovary	ovary
21	chr4:141879400-141881400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr4:141879600-141881000	Strong transcription	Fetal Muscle Trunk	muscle
23	chr4:141879600-141883000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr4:141879800-141880200	Weak transcription	Fetal Muscle Leg	muscle

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