Variant report

Variant	rs10519572
Chromosome Location	chr4:141872792-141872793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:141870898..141873805-chr4:142207109..142209928,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11942518	1.00[MEX][hapmap]
rs1425442	1.00[MEX][hapmap]
rs17006600	1.00[MEX][hapmap]
rs17006671	1.00[CEU][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17006871	1.00[MEX][hapmap]
rs3909596	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61425208	0.87[AMR][1000 genomes]
rs6813119	1.00[MEX][hapmap]
rs7661013	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830090	chr4:141770494-141947764	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830091	chr4:141796603-141980546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv880168	chr4:141826780-141900370	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141856000-141875600	Weak transcription	Fetal Kidney	kidney
2	chr4:141859800-141875200	Weak transcription	Fetal Lung	lung
3	chr4:141861400-141876400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr4:141861400-141876600	Weak transcription	Aorta	Aorta
5	chr4:141862200-141891000	Weak transcription	Psoas Muscle	Psoas
6	chr4:141863800-141880600	Weak transcription	Left Ventricle	heart
7	chr4:141864200-141879200	Weak transcription	Fetal Muscle Leg	muscle
8	chr4:141865800-141876600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:141866200-141875800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr4:141866200-141876200	Weak transcription	Fetal Stomach	stomach
11	chr4:141866400-141873600	Weak transcription	NH-A	brain
12	chr4:141866600-141873600	Weak transcription	Osteobl	bone
13	chr4:141867800-141879000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr4:141868800-141887400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:141869000-141873600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr4:141869000-141877200	Weak transcription	Ovary	ovary
17	chr4:141869000-141879400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:141869000-141879600	Weak transcription	Fetal Muscle Trunk	muscle
19	chr4:141869000-141889000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr4:141869600-141873800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr4:141870200-141876000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr4:141871000-141873800	Weak transcription	Fetal Heart	heart
23	chr4:141872400-141874400	Weak transcription	Colon Smooth Muscle	Colon

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