Variant report

Variant	rs1425442
Chromosome Location	chr4:141833760-141833761
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10519572	1.00[MEX][hapmap]
rs11942518	1.00[MEX][hapmap]
rs13130687	0.98[AFR][1000 genomes]
rs17006600	1.00[MEX][hapmap]
rs17006871	1.00[MEX][hapmap]
rs6813119	1.00[MEX][hapmap]
rs7685918	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830090	chr4:141770494-141947764	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830091	chr4:141796603-141980546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv880168	chr4:141826780-141900370	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141816200-141851400	Weak transcription	Brain Anterior Caudate	brain
2	chr4:141823200-141855800	Weak transcription	Osteobl	bone
3	chr4:141825800-141847200	Weak transcription	Fetal Kidney	kidney
4	chr4:141826000-141834000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr4:141826600-141835000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:141826600-141836600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr4:141826800-141833800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr4:141828400-141834400	Weak transcription	Right Atrium	heart
9	chr4:141829000-141834400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr4:141829600-141845600	Weak transcription	Fetal Heart	heart
11	chr4:141830200-141847600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:141830600-141834200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr4:141830600-141834400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr4:141832200-141834000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:141832200-141845800	Weak transcription	Ovary	ovary
16	chr4:141832200-141846200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr4:141832200-141855200	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr4:141832400-141834400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr4:141832400-141834600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr4:141832400-141836000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr4:141832400-141846000	Weak transcription	Adipose Nuclei	Adipose
22	chr4:141832400-141846400	Weak transcription	Right Ventricle	heart
23	chr4:141832600-141833800	Weak transcription	Fetal Stomach	stomach
24	chr4:141832600-141834200	Weak transcription	Fetal Intestine Small	intestine
25	chr4:141832600-141834800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr4:141832600-141836000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr4:141832600-141836200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr4:141832600-141836200	Weak transcription	Fetal Muscle Trunk	muscle
29	chr4:141832600-141836400	Weak transcription	Fetal Brain Female	brain
30	chr4:141832600-141836600	Weak transcription	Primary hematopoietic stem cells	blood
31	chr4:141832600-141836600	Weak transcription	Fetal Muscle Leg	muscle
32	chr4:141832600-141846200	Weak transcription	Stomach Smooth Muscle	stomach
33	chr4:141832600-141847800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr4:141833600-141833800	Enhancers	Left Ventricle	heart
35	chr4:141833600-141833800	Enhancers	Spleen	Spleen
36	chr4:141833600-141834000	Enhancers	Colon Smooth Muscle	Colon
37	chr4:141833600-141835000	Enhancers	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links