Variant report

Variant	rs17006871
Chromosome Location	chr4:142019932-142019933
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10519572	1.00[MEX][hapmap]
rs1425442	1.00[MEX][hapmap]
rs17006913	1.00[AMR][1000 genomes]
rs17006916	1.00[AMR][1000 genomes]
rs56044111	1.00[AMR][1000 genomes]
rs57425272	1.00[AMR][1000 genomes]
rs57567945	1.00[AMR][1000 genomes]
rs6813119	1.00[MEX][hapmap]
rs73849810	1.00[AMR][1000 genomes]
rs73849811	1.00[AMR][1000 genomes]
rs73849812	1.00[AMR][1000 genomes]
rs73849843	1.00[AMR][1000 genomes]
rs73849846	1.00[AMR][1000 genomes]
rs73849847	1.00[AMR][1000 genomes]
rs7669598	1.00[AMR][1000 genomes]
rs7672823	1.00[AMR][1000 genomes]
rs7692128	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv880169	chr4:142005573-142038481	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142000800-142031600	Weak transcription	Right Ventricle	heart
2	chr4:142003600-142021000	Weak transcription	Fetal Kidney	kidney
3	chr4:142010400-142027600	Weak transcription	Left Ventricle	heart
4	chr4:142013000-142040400	Weak transcription	Psoas Muscle	Psoas
5	chr4:142017800-142020000	Enhancers	Fetal Heart	heart
6	chr4:142018400-142020400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr4:142018400-142025800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:142018600-142023400	Weak transcription	Colon Smooth Muscle	Colon
9	chr4:142019800-142022800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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