Variant report

Variant	rs3912255
Chromosome Location	chr2:180776022-180776023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10202606	0.94[ASN][1000 genomes]
rs13390301	0.94[ASN][1000 genomes]
rs13426336	0.82[ASN][1000 genomes]
rs17777135	0.82[EUR][1000 genomes]
rs259829	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6721379	0.94[ASN][1000 genomes]
rs6729955	0.82[ASN][1000 genomes]
rs6744768	0.94[ASN][1000 genomes]
rs6759348	0.94[ASN][1000 genomes]
rs73032151	0.94[ASN][1000 genomes]
rs73032156	0.94[ASN][1000 genomes]
rs7561388	0.94[ASN][1000 genomes]
rs7583461	0.94[ASN][1000 genomes]
rs7597809	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002305	chr2:180568558-180812846	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428731	chr2:180629389-180805171	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv875472	chr2:180696414-181024926	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
4	nsv875473	chr2:180696414-181055597	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	nsv521134	chr2:180746041-180848488	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1006598	chr2:180766983-180923051	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180774600-180776200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr2:180774800-180776200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr2:180774800-180776200	Enhancers	H9 Cell Line	embryonic stem cell
4	chr2:180774800-180776200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr2:180774800-180776200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr2:180775800-180776800	Enhancers	Liver	Liver
7	chr2:180776000-180776600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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